Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_M12
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    25   0.90 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    25   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.3  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   8.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   8.4  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   8.4  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 564 NGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCV 421
           NG C+ +C  A    + S    C C DG +L   D  +C+   S   V
Sbjct: 40  NGHCSHLCLPAPRINSKSPLLSCACPDGLKLL-SDGLMCVEKVSTTIV 86


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 564 NGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVCL 445
           NG C+ +C  A    + S    C C DG +L   D  +C+
Sbjct: 40  NGHCSHLCLPAPRINSKSPLLSCACPDGLKLL-SDGLMCV 78


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -3

Query: 252 TCIRNNTACSANCSAGGEGVRARQRLPVGANPLPRRSYFRRAGGL-ADQLAAGRXP 88
           +C+    A +A  SAGG G  A  R P      P R  F  + G   D  A G  P
Sbjct: 4   SCLIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPPSRVEFSNSSGAWLDCTATGSPP 59


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -3

Query: 252 TCIRNNTACSANCSAGGEGVRARQRLPVGANPLPRRSYFRRAGGL-ADQLAAGRXP 88
           +C+    A +A  SAGG G  A  R P      P R  F  + G   D  A G  P
Sbjct: 4   SCLIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPPSRVEFSNSSGAWLDCTATGSPP 59


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 501 KCTCDDGYRLSPEDP 457
           +C CD GY  + +DP
Sbjct: 295 ECRCDPGYFRAEKDP 309


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 369 RNDTNSNVCYKKCDGACE 316
           R    SN  + +CDG C+
Sbjct: 34  RGKCPSNEIFSRCDGRCQ 51


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 369 RNDTNSNVCYKKCDGACE 316
           R    SN  + +CDG C+
Sbjct: 34  RGKCPSNEIFSRCDGRCQ 51


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 240 NNTACSANCSAGGE 199
           N++AC+ANC + G+
Sbjct: 31  NDSACAANCHSLGK 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,761
Number of Sequences: 438
Number of extensions: 4926
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)