Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_M11
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    31   1.0  
U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 717 PYASSHPPLXXRYINPDHQSPIPYTNHPRLNIHFHQSPDAV 595
           PY  +  P    Y +  HQSP P+ +H       H++P+ V
Sbjct: 207 PYDQAQGPSGPSYYSQHHQSPPPHHHHHHPMPKIHENPEQV 247


>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -3

Query: 668 IINPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPXSSEAP-SAYLTPSSLGMXKGVSP 492
           I+ PR     TP L  + I+P+     +F P + PP    +P  A   P++L      S 
Sbjct: 522 ILRPRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSL 581

Query: 491 PYFQVNDESQASRLISR 441
           P   V ++      ++R
Sbjct: 582 PNTYVPNQESFDESVNR 598


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -3

Query: 668 IINPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPXSSEAP-SAYLTPSSLGMXKGVSP 492
           I+ PR     TP L  + I+P+     +F P + PP    +P  A   P++L      S 
Sbjct: 522 ILRPRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSL 581

Query: 491 PYFQVNDESQASRLISR 441
           P   V ++      ++R
Sbjct: 582 PNTYVPNQESFDESVNR 598


>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -3

Query: 716 LMHQATLPXDXGTSTRIINPRFHTPT-TPDLTSISINPLTPX*KEFAPGLKPPXSSEAPS 540
           ++ Q T P    TSTR  +    TPT TP++T  ++ P+T          +   S+ +P+
Sbjct: 160 ILQQLTTPRSARTSTRAASGN-RTPTGTPNMTR-NVRPVTN---------RTSSSNVSPA 208

Query: 539 AYLTPSSLGMXKGVSPPYFQV 477
           A +TP +    +   PP  +V
Sbjct: 209 AQVTPGTSSNHRSRLPPTIRV 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,077,000
Number of Sequences: 27780
Number of extensions: 342535
Number of successful extensions: 980
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)