Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_M08
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 153 2e-38
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 30 0.44
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 28 1.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.1
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 4.1
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 5.4
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 9.4
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 25 9.4
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 25 9.4
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 9.4
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 9.4
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 9.4
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 153 bits (372), Expect = 2e-38
Identities = 89/220 (40%), Positives = 114/220 (51%)
Frame = -1
Query: 784 EVRDKLLENQSXXXXXXXXXXPLSVVIPAHNTGXGPEKTSFFQALXIPTKISKVLLKSST 605
EVR+ ++ N PL V +PA NTG P KTSFFQAL IPTKI++ ++ ++
Sbjct: 95 EVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITS 154
Query: 604 MYTS*SPVTKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQ 425
S KVG SEATLLNMLNISPF+YG+ V +YD G +F+PEILD+ EDL
Sbjct: 155 DVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLL 214
Query: 424 AGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFX 245
+ + + A+SL YPTI S HS+ N +KNL+ K F+ DPS F
Sbjct: 215 SAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF- 273
Query: 244 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 125
SD+DMGFGLFD
Sbjct: 274 -VVAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 29.9 bits (64), Expect = 0.44
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -1
Query: 634 ISKVLLKSSTMYTS*SPVTKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDI 455
IS VL K + S P + G+ L +SPFS + + +YD T P L+I
Sbjct: 5 ISSVLAKEESENGSPIPALEEGSVYHVSLKSEGVSPFSDRIQLNYLYDGKTFSDPSNLNI 64
Query: 454 KPED 443
++
Sbjct: 65 HQQE 68
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 263 LNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGTE 442
L L+ G S+ SSDG + + + ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 443 IFWFDVQNF 469
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 260 VLNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGT 439
V L D G + +C+ +D ++++T + +++S KS + N EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075
Query: 440 EI 445
E+
Sbjct: 1076 EL 1077
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 284 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSS 424
G FF + CD + G K + N S N K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 468 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLVTGLQDV 599
S +V +S TCL + NGE+ + ++S + T T +Q++
Sbjct: 204 SSWNVVGDSATCLLSCSSRNGEIRILKIAISSHSDTFDTAMQEL 247
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,805
Number of Sequences: 5004
Number of extensions: 47457
Number of successful extensions: 107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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