Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_M06
         (1117 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.29 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   0.42 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -1

Query: 574 KXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
           K  PPPPP  +     P      P     GG  PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 567 PPPPPPPXXVXXXPP 523
           PPPPPPP      PP
Sbjct: 762 PPPPPPPGVAGAGPP 776



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = -3

Query: 575 KXXPPPPPPXFXXGXPPRXXEXXXXGVFXGGXXPPP 468
           K  PPPPP        P            GG  PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect(2) = 0.42
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 567 PPPPPPPXXV 538
           PPPPPPP  V
Sbjct: 946 PPPPPPPPLV 955



 Score = 24.2 bits (50), Expect(2) = 0.42
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 585 GXXKKXPPPPPPP 547
           G     PPPPPPP
Sbjct: 939 GVMPAFPPPPPPP 951


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 576 KKXPPPPPPP 547
           KK PPPPPPP
Sbjct: 308 KKRPPPPPPP 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,158
Number of Sequences: 5004
Number of extensions: 32571
Number of successful extensions: 215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 591678054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)