Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_M06
(1117 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.039
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.039
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.039
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 28 0.17
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 34 0.21
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 34 0.21
Z82269-4|CAB70200.2| 633|Caenorhabditis elegans Hypothetical pr... 27 0.22
AL021487-14|CAA16360.3| 633|Caenorhabditis elegans Hypothetical... 27 0.22
Z82269-5|CAH60772.1| 618|Caenorhabditis elegans Hypothetical pr... 27 0.22
AL021487-15|CAH60766.1| 618|Caenorhabditis elegans Hypothetical... 27 0.22
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 0.37
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 26 0.51
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 26 0.51
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.84
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 31 1.1
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 31 1.1
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 1.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.4
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 3.4
AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical... 25 4.0
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 27 4.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.5
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 29 6.0
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 6.0
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 6.0
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 7.9
AL117195-26|CAB55037.1| 153|Caenorhabditis elegans Hypothetical... 26 9.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 36.3 bits (80), Expect = 0.039
Identities = 21/54 (38%), Positives = 21/54 (38%)
Frame = -1
Query: 628 PXEGXPPGGXFXXGGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
P G PP GG PPPPP PP P G F GG PPP
Sbjct: 737 PITGGPPPPP-PPGGLPPISGGPPPPPPPPGGCPPPPPP-PPPGGFKGGPPPPP 788
Score = 35.1 bits (77), Expect = 0.091
Identities = 22/54 (40%), Positives = 22/54 (40%)
Frame = -3
Query: 629 PXXGGPPGGXFLXXGGXXKXXPPPPPPXFXXGXPPRXXEXXXXGVFXGGXXPPP 468
P PPGG GG PPPPP G PP G F GG PPP
Sbjct: 742 PPPPPPPGGLPPISGG------PPPPPPPPGGCPPPPPPPPPGG-FKGGPPPPP 788
Score = 30.7 bits (66), Expect = 1.9
Identities = 22/65 (33%), Positives = 23/65 (35%)
Frame = -2
Query: 840 PPPLXXXTPG*KGGXXXXXXXPPPGXXXXRXXGGPPPXXXPXXXXMXXVVXFXXCPPKKX 661
PPP P GG PPPG GGPPP P V PPKK
Sbjct: 758 PPP----PPPPPGGCPPPPPPPPPGGFK----GGPPPPPPPGMFAPMAPVIPDYLPPKKV 809
Query: 660 XRXXG 646
+ G
Sbjct: 810 PKVDG 814
Score = 29.5 bits (63), Expect = 4.5
Identities = 23/80 (28%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Frame = -2
Query: 777 PPPGXXXXRXXGGPPPXXXPXXXXMXXVVXFXXCPPKKXXRXX---GEXXXXXXXRGXPR 607
PPP GGPPP P + + PP G G P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGG--LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 606 GVFFXXGGXXKKXPPPPPPP 547
G K PPPPPPP
Sbjct: 771 PPPPPPPGGFKGGPPPPPPP 790
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = -1
Query: 628 PXEGXPPGGXFXXGGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
P G PP GG PPPPP PP P GG PPP
Sbjct: 721 PITGGPPPPP-PPGGLPPITGGPPPPPP-PGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 29.1 bits (62), Expect = 6.0
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Frame = -3
Query: 629 PXXGGPPGGXFLXXGGXXKXXPPPPP--PXFXXGXPPRXXEXXXXGVFXGGXXPPP 468
P GGPP L PPPP P G PP + G PPP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 36.3 bits (80), Expect = 0.039
Identities = 21/54 (38%), Positives = 21/54 (38%)
Frame = -1
Query: 628 PXEGXPPGGXFXXGGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
P G PP GG PPPPP PP P G F GG PPP
Sbjct: 737 PITGGPPPPP-PPGGLPPISGGPPPPPPPPGGCPPPPPP-PPPGGFKGGPPPPP 788
Score = 35.1 bits (77), Expect = 0.091
Identities = 22/54 (40%), Positives = 22/54 (40%)
Frame = -3
Query: 629 PXXGGPPGGXFLXXGGXXKXXPPPPPPXFXXGXPPRXXEXXXXGVFXGGXXPPP 468
P PPGG GG PPPPP G PP G F GG PPP
Sbjct: 742 PPPPPPPGGLPPISGG------PPPPPPPPGGCPPPPPPPPPGG-FKGGPPPPP 788
Score = 30.7 bits (66), Expect = 1.9
Identities = 22/65 (33%), Positives = 23/65 (35%)
Frame = -2
Query: 840 PPPLXXXTPG*KGGXXXXXXXPPPGXXXXRXXGGPPPXXXPXXXXMXXVVXFXXCPPKKX 661
PPP P GG PPPG GGPPP P V PPKK
Sbjct: 758 PPP----PPPPPGGCPPPPPPPPPGGFK----GGPPPPPPPGMFAPMAPVIPDYLPPKKV 809
Query: 660 XRXXG 646
+ G
Sbjct: 810 PKVDG 814
Score = 29.5 bits (63), Expect = 4.5
Identities = 23/80 (28%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Frame = -2
Query: 777 PPPGXXXXRXXGGPPPXXXPXXXXMXXVVXFXXCPPKKXXRXX---GEXXXXXXXRGXPR 607
PPP GGPPP P + + PP G G P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGG--LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 606 GVFFXXGGXXKKXPPPPPPP 547
G K PPPPPPP
Sbjct: 771 PPPPPPPGGFKGGPPPPPPP 790
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = -1
Query: 628 PXEGXPPGGXFXXGGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
P G PP GG PPPPP PP P GG PPP
Sbjct: 721 PITGGPPPPP-PPGGLPPITGGPPPPPP-PGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 29.1 bits (62), Expect = 6.0
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Frame = -3
Query: 629 PXXGGPPGGXFLXXGGXXKXXPPPPP--PXFXXGXPPRXXEXXXXGVFXGGXXPPP 468
P GGPP L PPPP P G PP + G PPP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 36.3 bits (80), Expect = 0.039
Identities = 21/54 (38%), Positives = 21/54 (38%)
Frame = -1
Query: 628 PXEGXPPGGXFXXGGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
P G PP GG PPPPP PP P G F GG PPP
Sbjct: 320 PITGGPPPPP-PPGGLPPISGGPPPPPPPPGGCPPPPPP-PPPGGFKGGPPPPP 371
Score = 35.1 bits (77), Expect = 0.091
Identities = 22/54 (40%), Positives = 22/54 (40%)
Frame = -3
Query: 629 PXXGGPPGGXFLXXGGXXKXXPPPPPPXFXXGXPPRXXEXXXXGVFXGGXXPPP 468
P PPGG GG PPPPP G PP G F GG PPP
Sbjct: 325 PPPPPPPGGLPPISGG------PPPPPPPPGGCPPPPPPPPPGG-FKGGPPPPP 371
Score = 30.7 bits (66), Expect = 1.9
Identities = 22/65 (33%), Positives = 23/65 (35%)
Frame = -2
Query: 840 PPPLXXXTPG*KGGXXXXXXXPPPGXXXXRXXGGPPPXXXPXXXXMXXVVXFXXCPPKKX 661
PPP P GG PPPG GGPPP P V PPKK
Sbjct: 341 PPP----PPPPPGGCPPPPPPPPPGGFK----GGPPPPPPPGMFAPMAPVIPDYLPPKKV 392
Query: 660 XRXXG 646
+ G
Sbjct: 393 PKVDG 397
Score = 29.5 bits (63), Expect = 4.5
Identities = 23/80 (28%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Frame = -2
Query: 777 PPPGXXXXRXXGGPPPXXXPXXXXMXXVVXFXXCPPKKXXRXX---GEXXXXXXXRGXPR 607
PPP GGPPP P + + PP G G P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGG--LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353
Query: 606 GVFFXXGGXXKKXPPPPPPP 547
G K PPPPPPP
Sbjct: 354 PPPPPPPGGFKGGPPPPPPP 373
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = -1
Query: 628 PXEGXPPGGXFXXGGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
P G PP GG PPPPP PP P GG PPP
Sbjct: 304 PITGGPPPPP-PPGGLPPITGGPPPPPP-PGGLPPISGGPPPPPPPPGGCPPPP 355
Score = 29.1 bits (62), Expect = 6.0
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Frame = -3
Query: 629 PXXGGPPGGXFLXXGGXXKXXPPPPP--PXFXXGXPPRXXEXXXXGVFXGGXXPPP 468
P GGPP L PPPP P G PP + G PPP
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 346
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 27.9 bits (59), Expect(2) = 0.17
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 567 PPPPPPPXXVXXXPP 523
PPPPPPP + PP
Sbjct: 86 PPPPPPPPTLKAPPP 100
Score = 27.5 bits (58), Expect(2) = 0.37
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 567 PPPPPPPXXVXXXPP 523
PPPPPPP PP
Sbjct: 85 PPPPPPPPPTLKAPP 99
Score = 25.0 bits (52), Expect(2) = 0.17
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 576 KKXPPPPPPP 547
K PPPPPPP
Sbjct: 64 KATPPPPPPP 73
Score = 24.2 bits (50), Expect(2) = 0.37
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2
Query: 576 KKXPPPPPPP 547
++ PPPPPPP
Sbjct: 81 QQAPPPPPPP 90
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 33.9 bits (74), Expect = 0.21
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -1
Query: 589 GGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
GG PPPPPP PP G P G PPP
Sbjct: 762 GGPVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPP 802
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 33.9 bits (74), Expect = 0.21
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -1
Query: 589 GGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
GG PPPPPP PP G P G PPP
Sbjct: 762 GGPVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPP 802
>Z82269-4|CAB70200.2| 633|Caenorhabditis elegans Hypothetical
protein Y45F10B.13a protein.
Length = 633
Score = 27.1 bits (57), Expect(2) = 0.22
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 567 PPPPPPPXXVXXXPPXXR 514
PPPPPPP V P R
Sbjct: 268 PPPPPPPKPVSREPSRAR 285
Score = 25.4 bits (53), Expect(2) = 0.22
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 576 KKXPPPPPPP 547
K PPPPPPP
Sbjct: 262 KSVPPPPPPP 271
>AL021487-14|CAA16360.3| 633|Caenorhabditis elegans Hypothetical
protein Y45F10B.13a protein.
Length = 633
Score = 27.1 bits (57), Expect(2) = 0.22
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 567 PPPPPPPXXVXXXPPXXR 514
PPPPPPP V P R
Sbjct: 268 PPPPPPPKPVSREPSRAR 285
Score = 25.4 bits (53), Expect(2) = 0.22
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 576 KKXPPPPPPP 547
K PPPPPPP
Sbjct: 262 KSVPPPPPPP 271
>Z82269-5|CAH60772.1| 618|Caenorhabditis elegans Hypothetical
protein Y45F10B.13b protein.
Length = 618
Score = 27.1 bits (57), Expect(2) = 0.22
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 567 PPPPPPPXXVXXXPPXXR 514
PPPPPPP V P R
Sbjct: 253 PPPPPPPKPVSREPSRAR 270
Score = 25.4 bits (53), Expect(2) = 0.22
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 576 KKXPPPPPPP 547
K PPPPPPP
Sbjct: 247 KSVPPPPPPP 256
>AL021487-15|CAH60766.1| 618|Caenorhabditis elegans Hypothetical
protein Y45F10B.13b protein.
Length = 618
Score = 27.1 bits (57), Expect(2) = 0.22
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 567 PPPPPPPXXVXXXPPXXR 514
PPPPPPP V P R
Sbjct: 253 PPPPPPPKPVSREPSRAR 270
Score = 25.4 bits (53), Expect(2) = 0.22
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 576 KKXPPPPPPP 547
K PPPPPPP
Sbjct: 247 KSVPPPPPPP 256
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 26.6 bits (56), Expect(2) = 0.37
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 567 PPPPPPPXXVXXXPP 523
PPPPPPP PP
Sbjct: 138 PPPPPPPRVPRTPPP 152
Score = 25.0 bits (52), Expect(2) = 0.37
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 585 GXXKKXPPPPPPP 547
G + PPPPPPP
Sbjct: 116 GDHEASPPPPPPP 128
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 25.8 bits (54), Expect(2) = 0.51
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 567 PPPPPPPXXVXXXPP 523
PPPPPPP V P
Sbjct: 157 PPPPPPPVSVPSSKP 171
Score = 25.4 bits (53), Expect(2) = 0.51
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 600 FFXXGGXXKKXPPPPPPP 547
F G PPPPPPP
Sbjct: 145 FSHHGATSSAPPPPPPPP 162
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 25.8 bits (54), Expect(2) = 0.51
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 567 PPPPPPPXXVXXXPP 523
PPPPPPP V P
Sbjct: 157 PPPPPPPVSVPSSKP 171
Score = 25.4 bits (53), Expect(2) = 0.51
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 600 FFXXGGXXKKXPPPPPPP 547
F G PPPPPPP
Sbjct: 145 FSHHGATSSAPPPPPPPP 162
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.9 bits (69), Expect = 0.84
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = -1
Query: 628 PXEGXPPGGXFXXGGXXXKXXPPPPPPXLXXXXPPXXXXG-XPXGXFXGGXXPPPXFF 458
P + P F PPPP P PP G P GG PPP F
Sbjct: 54 PGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMF 111
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -3
Query: 620 GGPPGGXFLXXGGXXKXXP-PPPPPXFXXGXPPR 522
GGPP G GG P PP PP G PPR
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRPPR 658
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +1
Query: 526 GGXPXXXXGGGGGGXFF-XXPPXXKKXPPGGPP 621
GG P GGGGGG PP P G PP
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -3
Query: 620 GGPPGGXFLXXGGXXKXXP-PPPPPXFXXGXPPR 522
GGPP G GG P PP PP G PPR
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRPPR 658
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +1
Query: 526 GGXPXXXXGGGGGGXFF-XXPPXXKKXPPGGPP 621
GG P GGGGGG PP P G PP
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 30.7 bits (66), Expect = 1.9
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = -1
Query: 619 GXPPGGXFXXGGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPPXFFKKKXXX 440
G PP F G PPPP + PP G G G PPP F ++
Sbjct: 754 GAPPP-PFGRGAGPMSSFPPPPRGGMHHMPPPPSFRGGRGGH---GGPPPPHFDRRGGGG 809
Query: 439 XVFFP 425
F P
Sbjct: 810 PPFRP 814
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -2
Query: 849 PXXPPPLXXXTPG*KGGXXXXXXXPPPGXXXXRXXGGPPPXXXP 718
P PPP TPG G PPP GG PP P
Sbjct: 297 PPPPPPPPGRTPG-PPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
Score = 29.1 bits (62), Expect = 6.0
Identities = 33/132 (25%), Positives = 36/132 (27%), Gaps = 5/132 (3%)
Frame = -1
Query: 847 PXPPPPXXXNXXXKGGXXXPX-TPXPPWGXXXARXGGAPXXXXXXXXXNDXCCXLXXLPP 671
P PPPP P TP PP G P + +PP
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPP---PPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318
Query: 670 XKXXKXXGXXXXXXPXEGXPPGGXFXXGGXXXKXXPPPPPPXLXXXXP---PXXXXGXPX 500
G PPG + G PPPPPP P P P
Sbjct: 319 PPPPSRFGPPGMGGMPPPPPPGMRYPGG------MPPPPPPRYPSAGPGMYPPPPPSRPP 372
Query: 499 GXFXG-GXXPPP 467
G G PPP
Sbjct: 373 APPSGHGMIPPP 384
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -2
Query: 849 PXXPPPLXXXTPG*KGGXXXXXXXPPPGXXXXRXXGGPPPXXXP 718
P PPP TPG G PPP GG PP P
Sbjct: 307 PPPPPPPPGRTPG-PPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
Score = 29.1 bits (62), Expect = 6.0
Identities = 33/132 (25%), Positives = 36/132 (27%), Gaps = 5/132 (3%)
Frame = -1
Query: 847 PXPPPPXXXNXXXKGGXXXPX-TPXPPWGXXXARXGGAPXXXXXXXXXNDXCCXLXXLPP 671
P PPPP P TP PP G P + +PP
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPP---PPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328
Query: 670 XKXXKXXGXXXXXXPXEGXPPGGXFXXGGXXXKXXPPPPPPXLXXXXP---PXXXXGXPX 500
G PPG + G PPPPPP P P P
Sbjct: 329 PPPPSRFGPPGMGGMPPPPPPGMRYPGG------MPPPPPPRYPSAGPGMYPPPPPSRPP 382
Query: 499 GXFXG-GXXPPP 467
G G PPP
Sbjct: 383 APPSGHGMIPPP 394
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = -3
Query: 614 PPGGXFLXXGGXXKXXPPPPPPXFXXGXPPRXXEXXXXGVFXGGXXPPP 468
PP L G PPPPPP GG PPP
Sbjct: 545 PPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPP 593
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 565 PPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
PPPPPP L P GG PPP
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPP 593
>AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical
protein Y69A2AR.14 protein.
Length = 555
Score = 25.4 bits (53), Expect(2) = 4.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 573 KXPPPPPPP 547
K PPPPPPP
Sbjct: 307 KPPPPPPPP 315
Score = 22.6 bits (46), Expect(2) = 4.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -2
Query: 564 PPPPPPXXVXXXPP 523
PPPPPP + P
Sbjct: 308 PPPPPPPPIHEAQP 321
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 27.1 bits (57), Expect(2) = 4.1
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +1
Query: 550 GGGGGGXFFXXPPXXKKXPPG--GPP 621
GGGGGG P PPG GPP
Sbjct: 123 GGGGGGGGCQCSPSSNTCPPGPRGPP 148
Score = 21.0 bits (42), Expect(2) = 4.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 526 GGXPXXXXGGGGGGXF 573
GG GGGGGG +
Sbjct: 90 GGGYGGAVGGGGGGGY 105
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 565 PPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
PPPPPP PP G P G PPP
Sbjct: 237 PPPPPP--PKGSPPLAGSGSPPPPPAAGSPPPP 267
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = -1
Query: 619 GXPPGGXFXXGGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
G PP + PPPPP PP G P G PPP
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPPT--GSPPPPPAGGSPPPPRAGSPPPPP 301
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 565 PPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
PPPPPP PP G P G PPP
Sbjct: 258 PPPPPP--PKGSPPLAGSGSPPPPPAAGSPPPP 288
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = -1
Query: 619 GXPPGGXFXXGGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
G PP + PPPPP PP G P G PPP
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPPT--GSPPPPPAGGSPPPPRAGSPPPPP 322
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 565 PPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
PPPPPP PP G P G PPP
Sbjct: 243 PPPPPP--PKGSPPLAGSGSPPPPPAAGSPPPP 273
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = -1
Query: 619 GXPPGGXFXXGGXXXKXXPPPPPPXLXXXXPPXXXXGXPXGXFXGGXXPPP 467
G PP + PPPPP PP G P G PPP
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPPT--GSPPPPPAGGSPPPPRAGSPPPPP 307
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 29.1 bits (62), Expect = 6.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 588 GGXXKKXPPPPPPPXXVXXXPP 523
G PPPPPPP + PP
Sbjct: 747 GNRPSSTPPPPPPPPPLAAAPP 768
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.1 bits (62), Expect = 6.0
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = -3
Query: 614 PPGGXFLXXGGXXKXXPP--PPPPXFXXGXPPRXXEXXXXGVFXGGXXPP 471
PP F+ G PP PPPP F G P +F GG PP
Sbjct: 306 PPPPHFMGRG----MPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPP 351
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.1 bits (62), Expect = 6.0
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = -3
Query: 614 PPGGXFLXXGGXXKXXPP--PPPPXFXXGXPPRXXEXXXXGVFXGGXXPP 471
PP F+ G PP PPPP F G P +F GG PP
Sbjct: 306 PPPPHFMGRG----MPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPP 351
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 7.9
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +3
Query: 468 GGGXXPPXKXPX-GXPFXXXGGXXXXKXGGGGGG 566
GGG PP P G GG GGGGGG
Sbjct: 106 GGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGG 139
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -1
Query: 559 PPPPXLXXXXPPXXXXGXPXGXFXGGXXPPPXFFKKKXXXXVFFPP 422
PPPP + PP P G PPP + V+ PP
Sbjct: 133 PPPPSMAYGMPPMPSGMMPPRGMPGA-YPPPRGYPPAPAPGVYMPP 177
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -1
Query: 559 PPPPXLXXXXPPXXXXGXPXGXFXGGXXPPPXFFKKKXXXXVFFPP 422
PPPP + PP P G PPP + V+ PP
Sbjct: 133 PPPPSMAYGMPPMPSGMMPPRGMPGA-YPPPRGYPPAPAPGVYMPP 177
>AL117195-26|CAB55037.1| 153|Caenorhabditis elegans Hypothetical
protein Y57A10A.32 protein.
Length = 153
Score = 25.8 bits (54), Expect(2) = 9.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 567 PPPPPPPXXVXXXP 526
PPPPPPP + P
Sbjct: 83 PPPPPPPQYIRDLP 96
Score = 21.0 bits (42), Expect(2) = 9.9
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -2
Query: 576 KKXPPPPPPP 547
++ P PPPPP
Sbjct: 77 EEPPAPPPPP 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,353,552
Number of Sequences: 27780
Number of extensions: 389513
Number of successful extensions: 4813
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2374
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3005123904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -