Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_M04
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 29 0.58
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.77
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.0
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 27 3.1
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 27 4.1
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr... 26 7.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 7.2
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 25 9.5
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 29.5 bits (63), Expect = 0.58
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 332 PPNADLSKPPDPERWLPKYERT 267
P + + PDP+RW+PK +RT
Sbjct: 524 PKSFNPKATPDPQRWIPKRDRT 545
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 605 PPPPXXSLXAXXPXPXXPPAXCTXPGPXXXPGXXVPPXS 721
PP SL A P P PP+ T P P + P S
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVS 279
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 593 GPXXPPPPXXSLXAXXPXPXXPPAXCTXPG 682
GP PPPP A P P PP + G
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/40 (30%), Positives = 13/40 (32%)
Frame = +2
Query: 596 PXXPPPPXXSLXAXXPXPXXPPAXCTXPGPXXXPGXXVPP 715
P PPPP + P P PPA P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/30 (33%), Positives = 11/30 (36%)
Frame = +2
Query: 593 GPXXPPPPXXSLXAXXPXPXXPPAXCTXPG 682
G PPPP + P P PP G
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 208 DIPWLPLMTSRLMPRRFLYAVRSYFGNHLSGSGG 309
D+PW P SR+ + A RS FG +++ G
Sbjct: 140 DLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMG 173
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 26.6 bits (56), Expect = 4.1
Identities = 23/92 (25%), Positives = 38/92 (41%)
Frame = -3
Query: 478 LTPWNRRNG*WELKSSRRLFKASRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPI 299
L P N+++ +KSS L KAS+ + +L A +A + N+ TS N+ +
Sbjct: 514 LNPVNQKSHSPAIKSSSTLRKASKTRIVDLSA-------PNSAVFSKNASGGDTSSNVSL 566
Query: 298 RKGGCQSTSELRTESDEALDVTSSRVAKECPP 203
G TES + + +E P
Sbjct: 567 LNGSASEEIPQNTESGQVFRKKIEMLRQEAGP 598
>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 458
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 115 RPRALGSASNSRRRKARDVNGSSTVINDICTLKKKKK 5
RP+ S+S +R AR S+T+ + LKKK+K
Sbjct: 14 RPKPSLDRSDSTKRAARAARFSTTLDANFQALKKKRK 50
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/49 (28%), Positives = 15/49 (30%)
Frame = +2
Query: 596 PXXPPPPXXSLXAXXPXPXXPPAXCTXPGPXXXPGXXVPPXSPXXXXVP 742
P P PP + P PPA P P P P VP
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVP 560
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/46 (28%), Positives = 15/46 (32%)
Frame = +2
Query: 605 PPPPXXSLXAXXPXPXXPPAXCTXPGPXXXPGXXVPPXSPXXXXVP 742
P PP + P PP P P V P +P VP
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP 620
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 500 QLETKIDIDALESSKWMMGAKVVK 429
QL K IDA++ +W AK +K
Sbjct: 56 QLRQKKAIDAIQEEEWKSNAKTIK 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,051
Number of Sequences: 5004
Number of extensions: 31959
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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