Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_L24
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.39 
07_03_0626 + 20060013-20060273,20061017-20061274                       30   2.7  
01_06_0695 - 31292622-31293317                                         28   8.4  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 84  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 212
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 341 RLGWLRP*RRSGIIPADGS 397
           RLGWLRP R S ++PA  S
Sbjct: 32  RLGWLRPSRLSAVVPASES 50


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +3

Query: 36  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 170
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,131,062
Number of Sequences: 37544
Number of extensions: 344326
Number of successful extensions: 985
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)