Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_L24
         (865 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK130238-1|BAC85311.1|  413|Homo sapiens protein ( Homo sapiens ...    35   0.33 
BC006350-1|AAH06350.1|  619|Homo sapiens BUD13 homolog (S. cerev...    31   5.4  

>AK130238-1|BAC85311.1|  413|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26728 fis, clone PNC06635. ).
          Length = 413

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = -2

Query: 414 RXGGAKLPSAGIMPERL*GRSQPSRIRPRICS--LWSPESREALNNVTLLVAFRIQNARR 241
           R GGA  P     P  L  R QP R+   +CS   W+  + E  +  T L         R
Sbjct: 18  RGGGAPAPQCVRSPAALSRRHQPGRLLLHVCSPVPWTGTATEGQSVGTCLPG----QFTR 73

Query: 240 DVEAHLDRGDRCYRFFS*HVHHGSEGP 160
            ++ H  RG  C+   S  V H S GP
Sbjct: 74  PLDRHRHRGSECWHLSSGSV-HPSPGP 99


>BC006350-1|AAH06350.1|  619|Homo sapiens BUD13 homolog (S.
           cerevisiae) protein.
          Length = 619

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 42  AGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSR 176
           +G S  R +HD+  PS  PR+ R  S+D S PR      PD   R
Sbjct: 211 SGASPRRVRHDSPDPSP-PRRARHGSSDISSPRRVHNNSPDTSRR 254


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,468,662
Number of Sequences: 237096
Number of extensions: 1872446
Number of successful extensions: 9246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8844
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)