Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_L22
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 222 4e-59
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 137 2e-33
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 134 2e-32
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 113 4e-26
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 108 8e-25
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 94 2e-20
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 30 0.32
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 27 3.0
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 27 3.0
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 5.3
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.2
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 9.2
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 222 bits (543), Expect = 4e-59
Identities = 102/184 (55%), Positives = 137/184 (74%), Gaps = 1/184 (0%)
Frame = -1
Query: 676 ITAMLSVPQCFRETKTKRGRAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNF 497
+TA+LSVP F + R + ADE + +F H DGDHLTLLNVYHA+K WC+++F
Sbjct: 527 LTALLSVPNVFVRPNSAR-KLADEMRQQFTHPDGDHLTLLNVYHAYKSGEGTADWCWNHF 585
Query: 496 INYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG 317
+++R+L S DNVR+QL R M+R ++ ST F K+YY+NIR+ALV+GFFMQVA G
Sbjct: 586 LSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANG 645
Query: 316 -SYLTVKDNQVVQLHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYE 140
+Y+T+KDNQVV LHPS L P+WV+YNEFVLTTK++IR VT I+PEWL+++AP YY+
Sbjct: 646 KNYVTMKDNQVVSLHPSCGLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYYD 705
Query: 139 LGNF 128
L +F
Sbjct: 706 LDDF 709
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 137 bits (331), Expect = 2e-33
Identities = 71/187 (37%), Positives = 113/187 (60%), Gaps = 2/187 (1%)
Frame = -1
Query: 676 ITAMLSVPQCFRETKTKRGRAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNF 497
I AMLSVP + + K+ + AD + +FA+ + DHLTLLNVY +K N +WCY+++
Sbjct: 954 IIAMLSVPNIWSRPREKQ-QEADRQRAQFANPESDHLTLLNVYTTWKMNRCSDNWCYEHY 1012
Query: 496 INYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLE-RT 320
I R ++ ++VR+QL R+MDR+ S + I +AL +G+F VA +
Sbjct: 1013 IQARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRE----LILRALCSGYFTNVAKRDSHE 1068
Query: 319 GSYLTVKDNQVVQLHPSTCLDHK-PDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYY 143
G Y T+ +N V +HPS L K +WVIY+E + T+K Y+ TV+ + P+WL+++AP ++
Sbjct: 1069 GCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFF 1128
Query: 142 ELGNFPQ 122
+ N Q
Sbjct: 1129 KFANANQ 1135
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 134 bits (323), Expect = 2e-32
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Frame = -1
Query: 613 ADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMD 434
AD+A+ F GDHLTLL++++ + +W +NF+ Y+SL +VR QL+ + +
Sbjct: 883 ADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRDQLANLCE 942
Query: 433 RFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG-SYLTVKDNQVVQLHPSTCL- 260
R ++ + S D I+KA+ G+F A L+R+G SY TVK NQ V +HPS+ +
Sbjct: 943 RVEIELVTNSSESLD---PIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVA 999
Query: 259 DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQ 122
+ KP +IY E VLTTK Y R +T+I+PEWLL+I+P Y++ N +
Sbjct: 1000 EKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHYFKPENIEE 1045
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 113 bits (271), Expect = 4e-26
Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 3/183 (1%)
Frame = -1
Query: 676 ITAMLSVPQCFRETKTKRGRAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNF 497
I +MLSVP F K +R +D A+ +F + DHL LLN+Y +++N WC +F
Sbjct: 934 IVSMLSVPSVFYRPK-ERAEESDAAREKFNVPESDHLMLLNIYQHWQRNGYSNSWCSKHF 992
Query: 496 INYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG 317
++ ++LK ++RQQL IM + ++ S E S D+ I +R+ L + +F Q A + G
Sbjct: 993 LHSKTLKRARDIRQQLVEIMSK---QKISLESVS-DWDI-VRRVLCSAYFHQAACAKGIG 1047
Query: 316 SYLTVKDNQVVQLHPSTC---LDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQY 146
Y+ ++ LH ++ L + PD+VIY+E VLT+K Y+ VT + P WL + Y
Sbjct: 1048 EYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVY 1107
Query: 145 YEL 137
Y +
Sbjct: 1108 YSV 1110
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 108 bits (260), Expect = 8e-25
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 5/182 (2%)
Frame = -1
Query: 676 ITAMLSVPQCFRETKTKRGRAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPH--WCYD 503
+ + LS F + KR A EA+++F H +GD LT LN + ++ D WC
Sbjct: 538 VVSCLSTDSMFLFPQEKRDEAI-EARLKFLHSEGDLLTCLNALRQYLESSHDSRKQWCSQ 596
Query: 502 NFINYRSLKSGDNVRQQLSR--IMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHL 329
NFIN R+LK+ ++R+QL + D + L +S E S+ N+ + ++G+ A L
Sbjct: 597 NFINRRALKTILDIRKQLREHCLKDGWELN-SSPEVNSE----NLLLSFLSGYITNTALL 651
Query: 328 ERTGSYLTVKDNQVVQLHPSTCL-DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAP 152
GSY T+ NQ + +HPS+ L K + ++Y+E V TTK+Y+R V+ I+ WL +AP
Sbjct: 652 HPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTKSYVRGVSSIRSNWLNAVAP 711
Query: 151 QY 146
Y
Sbjct: 712 HY 713
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 93.9 bits (223), Expect = 2e-20
Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 1/173 (0%)
Frame = -1
Query: 676 ITAMLSVPQCFRETKTKRGRAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNF 497
I ++L+ + F + A A F +GD +T LNV+ +F N +D WC N+
Sbjct: 471 IASILTAGEVFYNPTSSSKNDAFVAHSSFFANEGDIITALNVFESFVGNKKDLQWCRKNY 530
Query: 496 INYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG 317
+NY++L+ ++R L R +++F++ T+ S D I K L++GF VAHL+ G
Sbjct: 531 LNYQTLRQALDIRTHLVRFLNKFSIP-TAQRLPSSD-CSKILKCLLDGFVRNVAHLQNDG 588
Query: 316 SYLTVKDNQVVQLHPSTCLDHKPDWVIYNEFVLT-TKNYIRTVTDIKPEWLLK 161
SY T+ QV S + K W++Y+ V + T+ +++ ++ I+ WL K
Sbjct: 589 SYKTIGGKQVWLDSSSVLHEKKTPWIMYSSAVESETQIFVKNISKIESFWLDK 641
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 30.3 bits (65), Expect = 0.32
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 506 IAPVGILHVLFEGVVYVQQREMVTVDVGKTHFSLVGSPSALRFGL 640
I P GI H+L EG+ Y Q E+ +D+ F+ +GS SAL L
Sbjct: 199 IRPEGIEHLLLEGLAYCQ--ELKVLDLQDNTFTHLGS-SALAIAL 240
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 549 YTFSNVRWSPSMWAKRILASSAALPRFVLVSR 644
YT SN+ W+ S+W L S A LP+ ++ R
Sbjct: 113 YTISNILWTFSIW----LESVAILPQLFMLQR 140
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 624 RFVLVSRKHCGTDSMAVMGKDPXGTVVIAAGYXHFG 731
R +V+ C TD+ + GKDP G + G+ G
Sbjct: 41 RIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAG 76
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 400 TSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQL 278
T D Y+ + AL+N Q+ + + LT+ +V+QL
Sbjct: 832 TQTDEYLRRKDALINNLQNQLESTKEVANELTITKERVLQL 872
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 547 HAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFN 425
HA ++ E +F YRSL G V++ SR+ R N
Sbjct: 2057 HALQEERERVKSLETDFDKYRSLLEGQRVKRSESRLSMRSN 2097
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 582 STVTISRC*TYTTPSNRTWRIPTGAMITSSITDR*SQATTSGSNLAGLW 436
STV S + P + + P SS T S +TTSGS+ + W
Sbjct: 218 STVIPSSIISAAPPDSASESTPASTSYASSTTSATSTSTTSGSSGSSDW 266
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 475 SGDNVRQQLSRIMDRFNLKRTSTEFT-SKDYYINIRKALVNGFFMQVAHLERTGSYL 308
S ++ LS ++ L ST D I + + N + +++AH +RT S+L
Sbjct: 29 SSKTCQETLSSLLRELQLSHFSTAVRPGSDTSIFVFVKVQNDYLIELAHNDRTSSFL 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,606
Number of Sequences: 5004
Number of extensions: 55214
Number of successful extensions: 165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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