Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_L17
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.014
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.91 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +2

Query: 515 SPXXXLXXXLLGXPSPPFXSXPLXPXPXXXGPPPXXXXGXVSXXXPPXPPPP 670
           SP       ++  P+P     P  P P   GPPP      V+   PP PPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 32.3 bits (70), Expect = 0.097
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
 Frame = +2

Query: 554 PSPPFXSXPLXPXPXXXG--PPPXXXXGXVSXXXPPXPPPPXXXS 682
           P+P     P+ P     G  PPP    G      PP PPPP   S
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +2

Query: 557  SPPFXSXPLXPXPXXXGPPPXXXXGXVSXXXPPXPPPPXXXS 682
            +PP  S P  P P    PPP      +    P  PPPP   S
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAP-PMPAGPPSAPPPPLPAS 1738


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 593 PXXXGPPPXXXXGXVSXXXPPXPPPP 670
           P    PPP    G      PP PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +2

Query: 557 SPPFXSXPLXPXPXXXGPPPXXXXGXVSXXXPPXPPPP 670
           +PP    PL   P             +S   PP PPPP
Sbjct: 340 APPAPFFPLGFSPHLNDESSRSRWSNISYSPPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,239
Number of Sequences: 5004
Number of extensions: 14407
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)