Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_L14
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100...    31   1.3  
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    30   1.8  
03_05_0844 + 28139996-28140736                                         30   2.3  
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331...    29   4.1  
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    28   7.2  
01_06_0475 + 29610268-29610711                                         28   7.2  

>08_01_0125 +
           1001397-1001865,1002743-1002810,1003359-1003490,
           1003649-1003810,1003973-1004260
          Length = 372

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -3

Query: 306 STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARL 127
           S NG       R P SS  +L  +G    L+L  S   F P   SG+R RSGG       
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGGMSVSLAS 256

Query: 126 LLGFVLATS-SGLSPVSSPTKV 64
             G V+    +GL   +SP ++
Sbjct: 257 PDGRVVGGGVAGLLVAASPVQI 278


>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 467 ISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPK-HVISDP 312
           +S Y +S SM  F  +AR   P++ ++ NY+          RRR +  + SDP
Sbjct: 53  VSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANLKRRRIECFLTSDP 105


>03_05_0844 + 28139996-28140736
          Length = 246

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -3

Query: 201 PLSFSP----DLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSSPTKVKATLK-*PLG 37
           PLSF P    D   G R  +G R+C   L   +  A + G+    +PT  KA  +  PLG
Sbjct: 21  PLSFLPVDHADYSGGRRMEAGARWCSDSLARRWAKA-AGGVRAPPTPTLAKAERRQAPLG 79

Query: 36  LS 31
           LS
Sbjct: 80  LS 81


>11_01_0432 +
           3313060-3313107,3313610-3313753,3314510-3314662,
           3315283-3315792,3315888-3317423,3317505-3317573,
           3317742-3317807,3318517-3318640,3319464-3319690
          Length = 958

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -3

Query: 246 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSS 76
           L TKG    +T+ H P+ FSP         S G   E+ L      + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259


>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = -1

Query: 551 QSRFCRIAV-GAPWFVRNVDLHDDLDLESISKYLQSASMRHFD--KAARHENPLI--VAA 387
           +++F ++AV GAP ++R VDL      + +   LQ     HF   K    E  L+  V+ 
Sbjct: 118 KAKFVKVAVDGAP-YLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSG 176

Query: 386 GNYIPDPADR 357
             Y+P   D+
Sbjct: 177 NEYVPTYEDK 186


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 270 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 181
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,078,233
Number of Sequences: 37544
Number of extensions: 424432
Number of successful extensions: 1173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)