Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_L13
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 131 5e-31
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 131 5e-31
07_01_0761 + 5849466-5850677 31 1.4
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 29 4.2
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.3
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 131 bits (317), Expect = 5e-31
Identities = 62/99 (62%), Positives = 75/99 (75%)
Frame = -1
Query: 572 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 393
P + + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 392 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 276
+ A TE+D +EK ITPMGGFPHYG V D++MI+G G
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
Score = 86.2 bits (204), Expect = 3e-17
Identities = 38/52 (73%), Positives = 44/52 (84%)
Frame = -2
Query: 292 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 137
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 48.0 bits (109), Expect = 8e-06
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -3
Query: 762 EAHIMESNLTVYHRGQS-EWAQRTXGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWH 586
+AH+ME + ++ + + IPVD+VF +DEMID I +RW
Sbjct: 178 KAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWG 237
Query: 585 TKKLPRKTHQG 553
+LPRKTH+G
Sbjct: 238 VTRLPRKTHRG 248
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 131 bits (317), Expect = 5e-31
Identities = 62/99 (62%), Positives = 75/99 (75%)
Frame = -1
Query: 572 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 393
P + + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 392 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 276
+ A TE+D +EK ITPMGGFPHYG V D++MI+G G
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
Score = 93.5 bits (222), Expect = 2e-19
Identities = 42/60 (70%), Positives = 48/60 (80%)
Frame = -2
Query: 292 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 113
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 48.0 bits (109), Expect = 8e-06
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -3
Query: 762 EAHIMESNLTVYHRGQS-EWAQRTXGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWH 586
+AH+ME + ++ + + IPVD+VF +DEMID I +RW
Sbjct: 178 KAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWG 237
Query: 585 TKKLPRKTHQG 553
+LPRKTH+G
Sbjct: 238 VTRLPRKTHRG 248
>07_01_0761 + 5849466-5850677
Length = 403
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 605 VSLLVGTQRSYPVRHTKXLRKVACI--GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 432
V+LLVG R V V+ + G HP SFT+ RA H K+ RI
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEH------KVLRI 182
Query: 431 GQGIH 417
G +H
Sbjct: 183 GTVVH 187
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +2
Query: 602 TPLYPFPLVTPMQSIISSWA----NTESTGIGSPXVLWAHS 712
TP+ P PLV P+ S W N + G S VL HS
Sbjct: 368 TPVVPIPLVPPLWSCFPGWPNGMWNAQCPGGSSSLVLGKHS 408
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -1
Query: 515 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 366
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 365 SEKSITPMGGFPHYGEVNN 309
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,942,184
Number of Sequences: 37544
Number of extensions: 474205
Number of successful extensions: 1126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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