Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_L11
         (831 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    36   0.047
AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    30   2.3  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    28   7.1  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 352 PTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYR--SRRLQMCQFFFPTETC 525
           P+ ++CQ+  S+  T  TCIR    N+ ++      +  + R  S+ LQ+C     T TC
Sbjct: 90  PSCSSCQSACSSACTTPTCIRTCQRNSCSNLCNTGSNSCTNRCNSQCLQICTTPSCTNTC 149

Query: 526 LLSCLLAC 549
             SC  AC
Sbjct: 150 SNSCSNAC 157


>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 133 VLWQVQPETSTCVPELQCVTDKWFWLPLYVPFKV 32
           +LWQ+    +TC P LQ   ++W  L L + FK+
Sbjct: 421 ILWQL---ITTCKPRLQVDKERWIQLLLNIKFKI 451


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 118 GPATAQCPTRRRTL-AQVQPERGAPISAVRAGG 213
           GP  A CP   RTL A   PE G   +A  AGG
Sbjct: 292 GPDAAYCPCPPRTLGAGAYPEGGDAAAAAPAGG 324


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 327 RRYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIAR 446
           RR+SH  + NRE ++S     LH  +L PP   E R++ R
Sbjct: 338 RRHSHQPQGNREVVTSEESKKLH--SLKPPL-VEKRKMRR 374


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = +3

Query: 315 RPATRRYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 464
           R A R+ S TE+ +  H SS   H  HR   H     EHR    H R  R
Sbjct: 270 RGADRKRS-TEQHHHSHRSS-RDHRDHRHRDHRGEHREHREHKEHRRDDR 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,945,931
Number of Sequences: 27780
Number of extensions: 333263
Number of successful extensions: 980
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)