Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_L08
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 104 1e-23
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 82 8e-17
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 64 3e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 63 4e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 61 2e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 3e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 60 3e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 57 3e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 3e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 50 3e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 47 3e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 44 2e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 44 2e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 44 3e-05
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 43 4e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 43 4e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 42 7e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 37 0.004
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.060
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 32 0.11
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 31 0.24
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 30 0.32
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 30 0.32
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.56
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.74
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 27 3.0
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 3.0
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 27 3.0
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 4.0
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 27 4.0
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 27 4.0
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 26 5.2
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 6.9
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 25 9.2
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 25 9.2
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 9.2
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 104 bits (250), Expect = 1e-23
Identities = 57/120 (47%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Frame = -3
Query: 643 PEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRI-L 467
P DIQ LA FL +Y+F++VG VG S ++ Q + V EKR+ L ++ + + L
Sbjct: 375 PRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTL 434
Query: 466 VFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGL 287
+FVETKR AD + L +SIHGDR QRERE AL+ F+SG+ I+VATAVA+RGL
Sbjct: 435 IFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGL 494
Score = 59.7 bits (138), Expect = 5e-10
Identities = 31/56 (55%), Positives = 35/56 (62%)
Frame = -2
Query: 773 FVVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSATFP*RHPTFGWSFLK 606
F+VLDEADRMLDMGF P I ++ M +RQTLMFSATFP FLK
Sbjct: 332 FLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLK 387
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 82.2 bits (194), Expect = 8e-17
Identities = 49/123 (39%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Frame = -3
Query: 643 PEDIQHLAGRFLNNYLFVAVGIVG-GASTDVEQIFIEVTKYEKRNSLKQLIEE---NDGK 476
P+++Q LA +LN+Y+ V VG + AS +++QI V +KR L + IEE +
Sbjct: 311 PKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDN 370
Query: 475 RILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAA 296
++L+F TKR AD I L + +IHGD+ Q ER+ L F++GK I+VAT VA+
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430
Query: 295 RGL 287
RG+
Sbjct: 431 RGI 433
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = -2
Query: 773 FVVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSATFP 642
++VLDEADRMLDMGF P I K++ + RQT+MFSAT+P
Sbjct: 272 YLVLDEADRMLDMGFEPQIRKIV---DQIR-PDRQTVMFSATWP 311
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 63.7 bits (148), Expect = 3e-11
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Frame = -3
Query: 643 PEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE-KRNSLKQLIEENDGKRIL 467
P+D+ + +F+ + + + V ++Q ++ V K E K ++L L E + +
Sbjct: 203 PQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAV 262
Query: 466 VFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGL 287
+F T+R D++ L+E+ SS+HGD Q +R+ + F++G IL+ T + ARG+
Sbjct: 263 IFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGI 322
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 767 VLDEADRMLDMGFMPSIEKM--MLHPTMVETTKRQTLMFSATFP 642
VLDEAD ML GF I + +L PT Q ++ SAT P
Sbjct: 166 VLDEADEMLSRGFKDQIYDIFQLLPPT------AQVVLLSATMP 203
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 63.3 bits (147), Expect = 4e-11
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
Frame = -3
Query: 643 PEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNS-----LKQLIEENDG 479
P ++ LA + L + + VG +++VEQI +EV E + S L +L
Sbjct: 610 PRAMEALARKVLKKPVEITVGGRSVVASEVEQI-VEVRPEESKFSRLLELLGELYNNQLD 668
Query: 478 KRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVA 299
R LVFV+ + +AD + + L ++ ++SIHG + Q +R+ + ++K+G +L+AT+V
Sbjct: 669 VRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVV 728
Query: 298 ARGL 287
ARGL
Sbjct: 729 ARGL 732
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -2
Query: 773 FVVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSATFP 642
++VLDEADRM D+GF P + +++ + RQT++FSATFP
Sbjct: 571 YLVLDEADRMFDLGFEPQVMRIINN----IRPDRQTVLFSATFP 610
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Frame = -3
Query: 643 PEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE-KRNSLKQLIEENDGKRIL 467
P+D+ + +F N + + V ++Q FI V K E K ++L L + + +
Sbjct: 205 PQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAV 264
Query: 466 VFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGL 287
+F ++R D++ + E +S+HG+ Q+ER+ +Q+F+ G +L+ T + ARG+
Sbjct: 265 IFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGI 324
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.1 bits (139), Expect = 3e-10
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Frame = -3
Query: 643 PEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKR-NSLKQLIEEND-GKRI 470
P + +LA +L + + +G +G A VEQ ++ K+ +++++E N I
Sbjct: 460 PPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPPI 519
Query: 469 LVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARG 290
++FV KRN + IA L+ ++HG + Q +RE A++ ++ ILVAT +A RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 289 L 287
+
Sbjct: 580 I 580
Score = 41.9 bits (94), Expect = 1e-04
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 15/70 (21%)
Frame = -2
Query: 773 FVVLDEADRMLDMGFMPSIEKMM---------------LHPTMVETTKRQTLMFSATFP* 639
+VV+DEADRMLDMGF + K++ L +++RQT+MFSAT P
Sbjct: 402 YVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPP 461
Query: 638 RHPTFGWSFL 609
R S+L
Sbjct: 462 RVANLAKSYL 471
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 60.1 bits (139), Expect = 3e-10
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 8/127 (6%)
Frame = -3
Query: 643 PEDIQHLAGRFLNNYLFVAVGIVG-GASTDVEQIFIEVTK--YEKRNSLKQLIEEN---D 482
PE ++ LA FL + + + +G AS ++ QI +E+ K L L+ ++
Sbjct: 356 PESVRALAATFLKDPVKITIGSDELAASQNITQI-VEILDDPRSKERMLDNLLRKHLSSG 414
Query: 481 GK--RILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVAT 308
GK +IL+FV K+ A + L+ + + IHGD Q R +AL +FKSGK +LVAT
Sbjct: 415 GKDDKILIFVLYKKEAARVEGTLARKYNVVG-IHGDMSQGARLQALNDFKSGKCPVLVAT 473
Query: 307 AVAARGL 287
VAARGL
Sbjct: 474 DVAARGL 480
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -2
Query: 773 FVVLDEADRMLDMGFMPSIEKMMLH-PTMVETTKRQTLMFSATFP*RHPTFGWSFLK 606
++VLDEADRMLD GF I ++ H P RQT+ FSAT+P +FLK
Sbjct: 312 YLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLK 368
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 56.8 bits (131), Expect = 3e-09
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Frame = -3
Query: 643 PEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEV-TKYEKRNSLKQLIEENDGK-RI 470
P ++ LA + + + VG+ A+ ++Q + V + K L+Q+I + K R+
Sbjct: 232 PSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRV 291
Query: 469 LVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARG 290
++FV+ A + L ++ IHG+ Q +REEAL F+ G+ +L+AT + ARG
Sbjct: 292 VIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARG 351
Query: 289 LGKH 278
+ H
Sbjct: 352 IDFH 355
Score = 30.3 bits (65), Expect = 0.32
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 773 FVVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSATFP*R 636
F V+DEADR+ + GF+ + ++ T K +FSAT P R
Sbjct: 192 FFVMDEADRLFEPGFIEQTDHILSACTSSNICKS---LFSATIPSR 234
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 53.6 bits (123), Expect = 3e-08
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Frame = -3
Query: 556 VEQIFIEVTKYEKRNSLKQL--IEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHG 383
++Q +I V+ + L L I EN K ++FV R A+ I ++L +L + +H
Sbjct: 231 LQQSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHS 290
Query: 382 DRMQREREEALQNFKSGKHCILVATAVAARGL 287
+ +QRER +L F++ ILVAT VA+RGL
Sbjct: 291 EMVQRERINSLGRFRAEAAKILVATDVASRGL 322
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -2
Query: 773 FVVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSAT 648
F+V+DEADR+L F ++ + + RQTL+F+AT
Sbjct: 156 FLVMDEADRLLSPTFADDLDDCF--SVLPASEDRQTLLFTAT 195
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 50.4 bits (115), Expect = 3e-07
Identities = 30/78 (38%), Positives = 37/78 (47%)
Frame = -3
Query: 520 KRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNF 341
K L L+ E G I++F T + +A +L +HG Q R AL F
Sbjct: 272 KDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKF 331
Query: 340 KSGKHCILVATAVAARGL 287
KSG LVAT VAARGL
Sbjct: 332 KSGARSTLVATDVAARGL 349
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/42 (45%), Positives = 31/42 (73%)
Frame = -2
Query: 773 FVVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSAT 648
++++DEADR+LDM F P I+K++ + +R+TL+FSAT
Sbjct: 192 YLIMDEADRLLDMDFGPIIDKIL----KIIPHERRTLLFSAT 229
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = -3
Query: 469 LVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARG 290
LVFV TK + ++++ +L + S I+G Q R + NF+ GK +LV T VA+RG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 289 L 287
+
Sbjct: 410 I 410
Score = 41.9 bits (94), Expect = 1e-04
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = -2
Query: 773 FVVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSATFP 642
+VV DEADR+ +MGF + + +LH T RQTL+FSAT P
Sbjct: 216 YVVFDEADRLFEMGFAAQLTE-ILHAL---PTSRQTLLFSATLP 255
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Frame = -3
Query: 556 VEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDR 377
+EQ ++ V ++ L ++ N K+++VF+ + + ++A +L+ L +HG +
Sbjct: 311 LEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQ 370
Query: 376 MQREREEALQNFKSGKHCILVATAVAARGL 287
Q+ R F + + IL+ T VAARGL
Sbjct: 371 KQQRRTNTFFEFCNAEKGILLCTNVAARGL 400
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = -2
Query: 770 VVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSAT 648
+V+DEADR+L++GF + ++M ++ + RQTL+FSAT
Sbjct: 240 LVIDEADRILEIGFEDEMRQIM---KILPSENRQTLLFSAT 277
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/71 (33%), Positives = 39/71 (54%)
Frame = -3
Query: 499 LIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCI 320
L +E +R ++F +K A + + L + IHG Q +R AL++F+ GK
Sbjct: 498 LCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNY 557
Query: 319 LVATAVAARGL 287
L+AT VA+RG+
Sbjct: 558 LLATDVASRGI 568
Score = 32.7 bits (71), Expect = 0.060
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = -2
Query: 770 VVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSAT 648
+V+DEADRML+ GF + +++ RQT++FSAT
Sbjct: 409 MVMDEADRMLEDGFADELNEII----QACPKSRQTMLFSAT 445
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 43.6 bits (98), Expect = 3e-05
Identities = 34/123 (27%), Positives = 56/123 (45%)
Frame = -3
Query: 655 RQHSPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGK 476
+ +SP + RF F+ ++ V + IE EK L LI GK
Sbjct: 332 KYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYPGK 391
Query: 475 RILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAA 296
+VF + I L+E ++ + +H Q++R ++L+ FK+ +LV T VAA
Sbjct: 392 T-MVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAA 450
Query: 295 RGL 287
RG+
Sbjct: 451 RGI 453
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -2
Query: 770 VVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSATF 645
+VLDEADR+L + K++ T+RQT +FSATF
Sbjct: 272 LVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATF 313
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 43.2 bits (97), Expect = 4e-05
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = -3
Query: 637 DIQHLAGRFLNNYLFVAVGIVGGASTD-VEQIFIEVTKYEKRNSLKQLIEENDGKRILVF 461
+I+ + +F+ N L + V + ++Q ++++ + K + L++ + ++++F
Sbjct: 242 EIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIF 301
Query: 460 VETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGL 287
V++ A+ + +L E + IHG Q ER + + FK I VAT V RG+
Sbjct: 302 VKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGI 359
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = -2
Query: 767 VLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSATFP 642
+LDEADR++DMGF SI + +H V TTK + L FSAT P
Sbjct: 193 ILDEADRLMDMGFAESI--LNIHEA-VTTTKTRKLCFSATMP 231
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 508 LKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSI-HGDRMQREREEALQNFKSG 332
L+QL N RI+VF+ T DF+ +L + I H +R ++F+
Sbjct: 283 LQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKC 342
Query: 331 KHCILVATAVAARGL 287
+ IL AT V ARG+
Sbjct: 343 QSGILFATDVVARGM 357
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 42.3 bits (95), Expect = 7e-05
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Frame = -3
Query: 658 FRQHSPEDIQHLAGRFLNNYLFVAVGIVGGAST--DVEQIFIEVTKYEKRNSLKQLIEEN 485
F + ++ LA L N F++V +ST ++ Q ++ V EK + L I +
Sbjct: 222 FSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTH 281
Query: 484 DGKRILVFVETKRNADFIAAMLSEQQ--LLTSSIHGDRMQREREEALQNFKSGKHCILVA 311
+ +VF+ + + F+ + + +HG + Q R E F S +H +L
Sbjct: 282 LKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFC 341
Query: 310 TAVAARGL 287
T + ARGL
Sbjct: 342 TDIVARGL 349
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = -2
Query: 770 VVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSAT 648
++LDEADR+LDMGF +++ ++ + RQT++FSAT
Sbjct: 189 LILDEADRILDMGFRTTLDAIVSSLPV----HRQTMLFSAT 225
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 36.7 bits (81), Expect = 0.004
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Frame = -3
Query: 508 LKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLT----SSI-HGDRMQ-------RE 365
LK ++D R ++FVE K A ++ + L S I HG Q R
Sbjct: 352 LKATYRKSDSVRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFSMTFRR 411
Query: 364 REEALQNFKSGKHCILVATAVAARGL 287
+++ L FK+GK+ +L+ATAVA G+
Sbjct: 412 QKDTLHKFKTGKYNVLIATAVAEEGI 437
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 32.7 bits (71), Expect = 0.060
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -2
Query: 767 VLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSATFP 642
V+DEAD++L F P IE+++ + RQ ++SATFP
Sbjct: 191 VMDEADKLLSPEFTPIIEQLLSY----FPKNRQISLYSATFP 228
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/90 (21%), Positives = 38/90 (42%)
Frame = -3
Query: 556 VEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDR 377
V Q + V + +K + L L + + ++F + + +A ++E H
Sbjct: 256 VTQYYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKM 315
Query: 376 MQREREEALQNFKSGKHCILVATAVAARGL 287
+Q R NF++G LV + + RG+
Sbjct: 316 LQSHRNRVFHNFRNGVCRNLVCSDLLTRGI 345
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = -2
Query: 773 FVVLDEADRMLDMGFMPSIEKMM 705
+VVLDE DR++DMGF ++ K++
Sbjct: 297 WVVLDEGDRLMDMGFEETLTKIL 319
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 30.7 bits (66), Expect = 0.24
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 556 VEQIFIEVTKYEKRNSLKQLIEEND 482
VE++ TKYE NSLK+++EE D
Sbjct: 251 VEKLLKTATKYEALNSLKRIMEETD 275
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 30.3 bits (65), Expect = 0.32
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Frame = -3
Query: 610 LNNYLFVAVGIVGGASTDVE-QIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADF 434
LNN+L + I+ A D Q+F + T +K K +EEN + F + K +
Sbjct: 134 LNNFLHSSAKILDRALCDQSNQLFTDYTVKKKSKKNKSQLEENGLNHLFTFQDEKITLNS 193
Query: 433 IAAMLS-----EQQLLTSSIHGDRMQREREEAL---QNFKSGKHCILVA 311
+ +S E+ L+TS R R A+ Q +K+ +L A
Sbjct: 194 VVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQRWKNSPESVLKA 242
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 30.3 bits (65), Expect = 0.32
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = -2
Query: 770 VVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSAT 648
++LDEAD ++DMGF +++ ++ +R+T +FSAT
Sbjct: 158 LILDEADTLIDMGFQRTLQSIISQ----LPKQRRTGLFSAT 194
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.56
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = -2
Query: 773 FVVLDEADRMLDMGFMPSIEKMML---HPTMVE 684
++V+DEADR+LD F ++ +M+ HP ++
Sbjct: 288 YMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQ 320
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 29.1 bits (62), Expect = 0.74
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 475 RILVFVETK-RNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFK 338
R ++ V+T+ + DF + S +LLTS H DR+ E+ + N +
Sbjct: 334 RNVIDVKTEIKIRDFTPTLRSAIELLTSGTHADRLLSEKRRRMSNLE 380
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 445 NADFIAAMLSEQQLLTSSIHGDRMQRER 362
N D A + LL+S++HG+R+ +ER
Sbjct: 24 NNDIKTAPILNSSLLSSAVHGERLIQER 51
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -3
Query: 481 GKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNF---KSGKHCILVA 311
G RIL+F + + D + + + + G + ER+ A+ +F S C L++
Sbjct: 887 GHRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLS 946
Query: 310 TAVAARGL 287
T G+
Sbjct: 947 TRAGGVGI 954
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = -3
Query: 538 EVTKYEKRNSLK--QLIEENDGKRILVFVETKRNADFIAAML----SEQQLLTSSIHGDR 377
+V EK N + ++ + GK++ VET RN D + L + QL+T S+ G R
Sbjct: 145 DVVVTEKANPANPAKFLKAHKGKKLNGIVETIRNGDQVRVRLFLSPKQHQLVTISLAGVR 204
Query: 376 MQR 368
R
Sbjct: 205 CPR 207
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 524 IFSDFNEDLFDVSTSASDDTNRHK*III*ETTSQMLDVFRGMLPKTLK 667
IF+ FN+ D AS + RH + I E+ S + D ML + +K
Sbjct: 106 IFTTFNDTTNDCMNEASCEDVRHSLLQIIESKSNLSDSVHKMLGERVK 153
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/46 (23%), Positives = 28/46 (60%)
Frame = -3
Query: 529 KYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSS 392
K+ + S ++ +E +G+R++ + KR +FI+ M + + ++S+
Sbjct: 152 KFLRGESSEESSDEEEGRRVVKSAKDKRYEEFISCMETIKNAMSSN 197
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -2
Query: 767 VLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSATF 645
VLDEAD MLD + + M + + T Q ++FSATF
Sbjct: 259 VLDEADNMLDQQGLGD-QSMRIKHLLPRNT--QIVLFSATF 296
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 438 SALRFVSTNTKILLPSFSSMSCFRLFR-FSYLVTSMKICSTSVLAPPTIP 584
++L++ S IL+P F + S +FR + S + S+ ++ P++P
Sbjct: 13 NSLKYASNRVGILIPPFQTASSLNIFRPYVIFSRSHRSLSSVDVSSPSLP 62
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 616 RFLNNYLFVAVGIVGGAS-TDVEQIFIEVTKYEKRNSLKQLIEENDGKRI 470
++L YL + VG S +D+E + V + ++ LI+E DGK I
Sbjct: 2 KYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDI 51
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 565 STDVEQIFIEVTKYEKRNSLKQLIEE-NDGKRILVFVETKRNADFIAAMLSEQQL 404
S ++ IE TK + + S++ L + + I + ET R+ +FI +LS QQL
Sbjct: 334 SPNLSSEIIENTKADIKKSIRSLNKAVSPENSIDIEDETDRDDEFICFLLSYQQL 388
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 553 EQIFIEVTKYEKRNSLKQLIEENDGKRILV 464
E++FIE+ K +S+ + +EN KR L+
Sbjct: 473 ERLFIEMEVNLKDSSVVVIFDENSSKRFLI 502
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 653 PKTLKFAFSWSPPWLDVASFFQCLA*TPYLTYGQPH 760
P + A W P +L V FF CLA T YL +G H
Sbjct: 15 PYHIVSASPW-PFFLSVVLFFNCLAATLYL-HGYKH 48
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 469 LVFVETKRNADFIAAML-SEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAAR 293
+++ ++ + + +AA L ++ L H + ER+ ++SG + I+VAT
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 292 GLGK 281
G+ K
Sbjct: 806 GVDK 809
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,517
Number of Sequences: 5004
Number of extensions: 57091
Number of successful extensions: 220
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -