Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_L06
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   101   8e-22
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   9.5  
AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   9.5  
AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.     28   9.5  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  101 bits (241), Expect = 8e-22
 Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 5/83 (6%)
 Frame = -3

Query: 588 DHQPITEXSYVNXPVIALCNTDSPXRFVDIXIPCNTKSSHSIGLMWWLLAREVLRLRGVL 409
           DHQ +TE SYV  PVI+  NT+SP + +DI +PCN K   SIGLMWW+LARE+L LRG +
Sbjct: 130 DHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKI 189

Query: 408 PRDQRW-----DVVVDLFFYRDP 355
            R   +     +++ DL+FYRDP
Sbjct: 190 SRQTGFVLEGKEIMPDLYFYRDP 212


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 213 CCTRCSSCFWSTPCSRRMVCP 151
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical
           protein F55B12.3b protein.
          Length = 585

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 633 FPXPXSXDCNXTLXQDHQPITEXSYVNXPVIALCNTDSPXRFVDI 499
           F  P   +C   L Q H  +T    +   ++  CN DS  R  DI
Sbjct: 445 FTRPEGQEC-VALLQGHTSLTSGMQLRGNILVSCNADSHVRVWDI 488


>Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical
           protein F55B12.3a protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 633 FPXPXSXDCNXTLXQDHQPITEXSYVNXPVIALCNTDSPXRFVDI 499
           F  P   +C   L Q H  +T    +   ++  CN DS  R  DI
Sbjct: 447 FTRPEGQEC-VALLQGHTSLTSGMQLRGNILVSCNADSHVRVWDI 490


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 164  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 259
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical
           protein Y40H7A.11 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 483 TKSSHSIGLMWWLLA 439
           T+  H IG+MWWL A
Sbjct: 72  TRVEHKIGIMWWLCA 86


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 164  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 259
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 633 FPXPXSXDCNXTLXQDHQPITEXSYVNXPVIALCNTDSPXRFVDI 499
           F  P   +C   L Q H  +T    +   ++  CN DS  R  DI
Sbjct: 447 FTRPEGQEC-VALLQGHTSLTSGMQLRGNILVSCNADSHVRVWDI 490


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,643
Number of Sequences: 27780
Number of extensions: 247543
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)