Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_L04
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    28   1.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   3.0  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   3.0  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   5.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.3  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   7.0  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   7.0  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   9.3  

>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 618 RHDVCKRSV--RSRSPHPLEIPSGYSITILQDSRRSAL 511
           R DV K+SV   S S  PL++  GYS+  L+D  R AL
Sbjct: 61  RLDVAKKSVYAESESKLPLKMKKGYSVH-LKDQSRDAL 97


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 270 RPPSSSNPSLATKGSTSELTH--RHSPLSFSPDLL 172
           RP SS+NP   T   +  L H  RH P   +P L+
Sbjct: 266 RPASSTNPVHNTSSDSQRLNHQNRHLPDDSNPSLM 300


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 297 NGAFRHHKHRPPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 172
           N + RH      SSS+ S + K STS+L    SP S  P  L
Sbjct: 14  NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 653 NKVTLYKTCIRPVMTYASVVFAHAARTHLKSLQVI 549
           N +T+ ++ +RPV TY S        +HL  + V+
Sbjct: 220 NDITIKESDVRPVSTYHSFALTSDNNSHLYGICVV 254


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 324 RHYGSS*SINGAFRHHKHRPP-SSSNPSLATKGST-SELTHRHSPLSFSPD 178
           R+YG +    G   ++ +  P SSS PS+ ++ +T SE     SP+S   D
Sbjct: 58  RYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETNSYSSPVSSYSD 108


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = -2

Query: 393 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRPPSSSNPSLATKGSTSEL 214
           +S W   T   +  G   +S  +  + S     G  +      PS+S+PS A+  S S+ 
Sbjct: 21  KSSWSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY 80

Query: 213 THRHS 199
             + +
Sbjct: 81  VRKEA 85


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 209 WVSSLVEPFVASDGFDEDGGRCLWCLK 289
           W      P VA D  DEDG   +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 348 KPSTSPKARHYGSS*SINGAFRHHKHRPPSSSNPSLATKGSTSELTHRHSPLS 190
           KPS    +R  G S ++  A    K    S S P +     T +++ +HSP+S
Sbjct: 24  KPSPPLPSRRKGKS-ALRSALE--KKNRKSKSKPKVTITSDTPKVSSQHSPVS 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,293
Number of Sequences: 5004
Number of extensions: 58511
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)