Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_L04
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 31 1.0
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062... 30 1.8
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15... 29 4.2
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 29 5.5
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 28 7.3
03_06_0233 + 32530174-32530492,32531081-32531127,32531277-325314... 28 7.3
02_02_0537 + 11308195-11309667 28 7.3
01_05_0645 - 23899579-23904483 28 7.3
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 28 9.6
10_08_0898 + 21424379-21424792,21424974-21425723 28 9.6
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = -2
Query: 372 TRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRPPSSSNPSLATKGSTSELTHRHSPL 193
T P P+ PS+ P RH ++ + R H P + PS + S S T +
Sbjct: 5 TAPPPPSSPPSSPPPLRHSPAALGTPRSRRRHSPSPSLALTPSSSASASASASTSSRPKV 64
Query: 192 SFSP 181
SP
Sbjct: 65 RPSP 68
>02_05_0530 -
29804939-29805547,29805658-29805885,29805978-29806261,
29807095-29807199,29807648-29808155
Length = 577
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 277 VVPKSTVNGSGGSIMTCFGRRRRFTIRS 360
+VP+ G GG++M GR R++ +RS
Sbjct: 120 IVPQEAAVGGGGAMMAVVGRSRQYVLRS 147
>11_01_0022 +
151233-151515,152632-152852,153579-153656,154558-154674,
155970-156316,156504-157032
Length = 524
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 552 NLKGFQVGAGCVSEHYACIR 611
N +QVG GC+S+ Y C+R
Sbjct: 348 NATNYQVGTGCLSDIYFCLR 367
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 342 STSPKARHYGSS*SINGAFRHHK-HRPPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 172
S SP++R++ S S + A R ++ HR S SL+ G HR + S SPD L
Sbjct: 168 SRSPRSRYHSYSPSPSPARRDYRDHRDDYSPGESLSPHGQDKR-HHRSNGRSASPDEL 224
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -2
Query: 342 STSPKARHYGSS*SINGAFRHHKHRPPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 172
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 973 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 1028
>03_06_0233 +
32530174-32530492,32531081-32531127,32531277-32531413,
32531673-32531841,32532598-32532885,32533021-32533107,
32533454-32534152,32534244-32534735
Length = 745
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -2
Query: 375 HTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRPPSSSNPSLATKGSTS 220
H+ NG PS+ K R GSS ++ +F+ ++ S N +L++ +T+
Sbjct: 519 HSLDPELNGSPSSKDKLRKDGSSKLLSHSFKDLGNKDIRSDNVALSSVAATT 570
>02_02_0537 + 11308195-11309667
Length = 490
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -2
Query: 342 STSPKARHYGSS*SINGAFRHHKHRPPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 172
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 131 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 186
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -2
Query: 342 STSPKARHYGSS*SINGAFRHHKHRPPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 172
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 1250 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 1305
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 402 PSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHR 268
P H + + RP RPNG P A GS I +HR
Sbjct: 59 PRHSAAFSRSLRPCRPNGPPPAFASAEFPGSVPDIAQMPPRRRHR 103
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 282 HHKHRPPSSSNPSLATKGSTSELTHRHSPLSFSPD 178
HH H PS AT +TS H+ S LSF+ D
Sbjct: 101 HHHHHIGGMGEPSGATPSATSS-DHQTSMLSFADD 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,460,025
Number of Sequences: 37544
Number of extensions: 474921
Number of successful extensions: 1208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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