Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_L04
         (784 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha prot...    35   0.38 
CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.                35   0.38 
BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directe...    35   0.38 
BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directe...    35   0.38 
BC036335-1|AAH36335.1| 1151|Homo sapiens BTBD12 protein protein.       31   6.2  
AB058687-1|BAB47413.1| 1167|Homo sapiens KIAA1784 protein protein.     31   6.2  

>L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha
           protein.
          Length = 598

 Score = 34.7 bits (76), Expect = 0.38
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 657 PQ*GNSXQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 547
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.
          Length = 598

 Score = 34.7 bits (76), Expect = 0.38
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 657 PQ*GNSXQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 547
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 34.7 bits (76), Expect = 0.38
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 657 PQ*GNSXQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 547
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 34.7 bits (76), Expect = 0.38
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 657 PQ*GNSXQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 547
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC036335-1|AAH36335.1| 1151|Homo sapiens BTBD12 protein protein.
          Length = 1151

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 375 HTRPSRPN--GKPSTSPKARHYGSS*SINGAFRHHKHRPPSSSNPSLATKGSTSEL 214
           H  PSRP+  G P +SP A H  S    + + R  KH PP  S  +    G   E+
Sbjct: 657 HRSPSRPHPGGHPHSSPLAPHPISGDRAHFSRRFLKHSPPGPSFLNQTPAGEVVEV 712


>AB058687-1|BAB47413.1| 1167|Homo sapiens KIAA1784 protein protein.
          Length = 1167

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 375 HTRPSRPN--GKPSTSPKARHYGSS*SINGAFRHHKHRPPSSSNPSLATKGSTSEL 214
           H  PSRP+  G P +SP A H  S    + + R  KH PP  S  +    G   E+
Sbjct: 673 HRSPSRPHPGGHPHSSPLAPHPISGDRAHFSRRFLKHSPPGPSFLNQTPAGEVVEV 728


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,607,465
Number of Sequences: 237096
Number of extensions: 2474386
Number of successful extensions: 8689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8682
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)