Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_L03
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   2.3  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.3  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    27   3.0  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   7.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   7.0  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   9.3  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 204  PRSQADIDYELKVRKFLEMTKEDSDYEEKVRNFLA 100
            P +   ++  L+  K L+  K+D +Y  +VR+F A
Sbjct: 1360 PEAYLQLEELLQTSKILQFVKDDPNYVARVRDFYA 1394


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 261 PYGYQPPVQTADDIAAQPPPRSQADIDYELKVRK 160
           PY      Q +    AQ PP  Q+DI  +L+++K
Sbjct: 687 PYDLPSSSQISSSALAQLPPSMQSDIQQQLRLQK 720


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 252 YQPPVQTADDIAAQPPPRSQADID 181
           YQ PV T ++    PPP  + DI+
Sbjct: 10  YQKPVDTEEENDKNPPPLDEGDIE 33


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 610 AVITLQALSRALRQWSCFSKNLTSLXFLMER 702
           A +T++AL   L ++ CF+KNL  +    E+
Sbjct: 184 AFLTIEALVVNLSKYLCFTKNLDDISIKAEK 214


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -3

Query: 695  MRKXK---LVRFFEKQDHCLKALDRACRVITAWLDQGLSH 585
            M+K K   L+ F++ +   +  +   CR++T W++  L H
Sbjct: 1184 MKKIKGIALMNFYKPKKVPIHVVQSFCRLLTTWMNPNLMH 1223


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 23  SCSGIGGCCCWPSSCILRLR 82
           S SG+G   CW S C+  +R
Sbjct: 439 SISGLGTLFCWGSICLAHIR 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,203
Number of Sequences: 5004
Number of extensions: 36243
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)