Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_L03
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.60 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   1.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   9.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 479 HHRH--RVTRPVLAPHRIHHLHHQIRVIQKVLGRRSVVLN 366
           HH+H      P + P   HH HHQ + +Q +  R+   L+
Sbjct: 335 HHQHGNHTMGPTMGPPHHHH-HHQTQSLQHLHYRQPPTLS 373


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 155 SR*PKKIQTMKKKFVTSSLKQRNTNVTARCKNLANNN 45
           SR PK I ++  K + ++    N N      N  NNN
Sbjct: 309 SREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNN 345


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -2

Query: 333 LSKRMAM----LGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQADID 181
           LSKR ++    LG   STS T +S+ +      P V  +D++       +Q+D D
Sbjct: 167 LSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSESDEVDVIGYTSNQSDTD 221


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 158 SSR*PKKIQTMKKKFVTSSLKQRNTNVTARCKNLANNN 45
           +S+ PK I ++   +  S+    N N      N  NNN
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNN 112


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 158 SSR*PKKIQTMKKKFVTSSLKQRNTNVTARCKNLANNN 45
           +S+ PK I ++   +  S+    N N      N  NNN
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNN 112


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 186 YQPETAAGAGRRCRPRFALEV 248
           Y+P  A G G+   P+ A EV
Sbjct: 163 YEPVWAIGTGKTATPQQAQEV 183


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 244 SSANRGRHRRPAPA 203
           S AN  RH RP PA
Sbjct: 391 SVANELRHSRPVPA 404


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 244 SSANRGRHRRPAPA 203
           S AN  RH RP PA
Sbjct: 391 SVANELRHSRPVPA 404


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 23  SCSGIGGCCCWP 58
           +C   GG C WP
Sbjct: 134 ACLSTGGSCYWP 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,160
Number of Sequences: 438
Number of extensions: 2445
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)