Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_K24
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133...    33   0.28 
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266...    31   1.5  
12_02_0905 - 24188563-24189189,24189648-24190577                       29   3.5  
03_01_0340 - 2680860-2682197                                           29   3.5  
12_02_0909 - 24217980-24218597,24219182-24219640                       29   4.6  
08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,440...    28   8.1  
01_06_0176 - 27233553-27234588,27235629-27235768                       28   8.1  

>02_01_0198 +
           1334563-1334994,1335872-1335919,1336096-1336351,
           1336733-1336881,1336969-1337097,1337425-1337592,
           1338416-1338610
          Length = 458

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 92  NVNFIRNITGASSDARRAQESPNEVHDAFRRSSGSEIES 208
           N+++IR+++GA  D   +++ PNEV    + SS  E+ S
Sbjct: 360 NISYIRSVSGAVVDLEESRDYPNEVLVMIKGSSSQEVLS 398


>07_01_0362 -
           2667031-2667090,2667182-2667426,2667749-2669471,
           2669578-2669921,2670544-2670667,2671350-2671599,
           2672486-2672571
          Length = 943

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +2

Query: 92  NVNFIRNITGASSDARRAQESPNEVHD--AFRRSSGSEIESIVRFVERTDIVTVDYLQCY 265
           N++F  +I     D  +A E P+ +H+  A  R+S       V   E     +V+Y  C 
Sbjct: 557 NLSFDLDIDVNKFDTYKA-EGPSALHNPSASMRASSVIAMDTVHSAEENSTESVEYHPCD 615

Query: 266 IQDVRRCSAAEPPGGL 313
           + DV + S+A   GG+
Sbjct: 616 VDDVHKPSSAVRSGGM 631


>12_02_0905 - 24188563-24189189,24189648-24190577
          Length = 518

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 167 HDAFRRSSGSEIESIV---RFVERTDIVTVDYLQCYIQDVRRCSAAEP 301
           H    + + +EI++ V   R VE  D+  + Y+QC I++  R   A P
Sbjct: 334 HPETMKKARAEIDANVGTARLVEEADMANLPYIQCVIKETLRLRTAGP 381


>03_01_0340 - 2680860-2682197
          Length = 445

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 430 QFHPGMNAHGTVEFAQGAFLSAGTVHLGSL 519
           +  PG N HG+V  +QG+F S+  V  G +
Sbjct: 350 EIQPGRNGHGSVRASQGSFRSSQAVANGDV 379


>12_02_0909 - 24217980-24218597,24219182-24219640
          Length = 358

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 182 RSSGSEIESIV---RFVERTDIVTVDYLQCYIQDVRRCSAAEPPGGLVPRLSSRE 337
           R +  EI S+V   R ++  D+  + YL+C I +  R     P   LVP  +SR+
Sbjct: 182 RKATDEINSVVGMSRLLQEPDLANLPYLRCIITETLRLYPLAP--HLVPHEASRD 234


>08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,
            4401725-4401817,4402357-4402551,4402643-4402735,
            4403554-4403649,4404186-4404633,4405078-4405745,
            4406822-4406884,4408650-4408847,4409265-4409982,
            4410447-4410580
          Length = 1056

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 124  RSRNVPNEVHVGFGSFSIRHRSGAPAPLTGGIIDL 20
            RSR  PN  H G G  S   R+   AP+ G   D+
Sbjct: 945  RSRQFPNMTHAGPGQKSHVERAAINAPVQGSAADV 979


>01_06_0176 - 27233553-27234588,27235629-27235768
          Length = 391

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 143 AQESPNEVHDAFRRSSGSEIESIVRFVERTDIVTVDYLQCYIQDVRRCSAAEPPGG 310
           +  S ++  DA       E +++ R++    I T DY+ CY  D    +A    GG
Sbjct: 254 SSSSSSQAADAGGGGESEEAKAMCRWLPHLYINTNDYICCYYNDAAAGTATVAAGG 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,906,344
Number of Sequences: 37544
Number of extensions: 469627
Number of successful extensions: 1452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)