Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_K22
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 29 1.0
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 3.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 4.1
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 27 4.1
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 5.4
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 7.1
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 7.1
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 9.4
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.4
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 9.4
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 430 ERPVDSVSRPVPAGWFWSSGVFRDTSGTVW 341
+R +D+ +P P +F G RD G +W
Sbjct: 492 DRYIDTYLKPYPGFYFTGDGATRDKDGYIW 521
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 286 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 408
R +E S S PVGPP W P T+TSL + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 263 PSRRSLRGESKALKRRPSQYGSPSGRPDGAAGVPEYPAGPEPACR 397
P + + R SK L+ GSPS A P PEPA +
Sbjct: 874 PKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPALK 918
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 424 PVDSVSRPVPAGWFWSSGVFRDTSGTV 344
P+ S+S+ VP GW W F T+G +
Sbjct: 293 PIASLSKIVPKGWQWCLSYFA-TAGVI 318
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.2 bits (55), Expect = 5.4
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +2
Query: 161 YTRRPIPSEVRTRMR*GGYR---GQHYNQRARLTPRTPSRRSLRGES-----KALKRRPS 316
+ ++P PS ++ GG R G+ + RL R+PS R S ++ +R S
Sbjct: 83 WAKQPPPSGPGSKR--GGRRERGGRVHGDSGRLRSRSPSPHEARSRSPYNDERSDRRSMS 140
Query: 317 -QYGSPSGRPDGAAGVPEY 370
+Y S S PDG + P+Y
Sbjct: 141 PRYRSRSRSPDGRSRSPDY 159
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 625 REREXXSLFRTDPSPSSRGPEAGIRPYVPAPVGSGLPPVKVKGRPE 488
RER+ + T + +S G G++ +G PVKV GR E
Sbjct: 425 RERQKAASAATSLAGTSLGNVMGLKDSNDEDAKAGTTPVKVAGRSE 470
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +2
Query: 143 TTPLHSYTRRPIPSEVRTRMR*GGYRGQHYNQRARLTPRTPSR--RSLRGESKALKRRPS 316
T+ HS+ P P R R ++Y RLTP S R R ++ +R S
Sbjct: 38 TSSTHSHPSNPPPPPTRLHDRSFKPVSKNYESEGRLTPPPVSMGYRYARSSKQSFQREDS 97
Query: 317 QY 322
Y
Sbjct: 98 GY 99
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 640 KEXXEREREXXSLFRTDPSPSSRGPEAGIRPYVPAPVGSGLPPVKVKG 497
K + ERE +LFR P S P + + P S L P ++G
Sbjct: 439 KSFTDEEREILTLFRNPPMRLSSEPPSSNGFSIAHPNNSPLRPPSLQG 486
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 278 LRGESKALKRRPSQYGSPSGRPDGAA 355
L S + R+P QY SPSG + AA
Sbjct: 608 LNPTSGSFLRQPMQYSSPSGVSESAA 633
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 589 PSPSSRGPEAGIRPYVPAPV 530
P+ + RG E + PY+P PV
Sbjct: 348 PNEAGRGDERRVIPYMPGPV 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,605
Number of Sequences: 5004
Number of extensions: 53910
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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