Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_K22
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 32 0.54
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 32 0.54
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 32 0.54
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 0.71
AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical ... 31 1.2
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 30 2.2
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 30 2.2
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 30 2.2
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 30 2.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.2
Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 28 6.7
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 28 6.7
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 28 8.8
U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical pr... 28 8.8
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 28 8.8
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 28 8.8
AL132860-25|CAB60510.1| 413|Caenorhabditis elegans Hypothetical... 28 8.8
AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical ... 28 8.8
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 28 8.8
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 28 8.8
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 489 SGRPLTFTGGSPLPT-GAGTYGRIPA 563
SG+PL+ GGSPLPT G Y +PA
Sbjct: 8856 SGKPLSADGGSPLPTDNNGNYVLVPA 8881
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 489 SGRPLTFTGGSPLPTGA-GTYGRIPASG 569
SG+PL+ GSPLPT A G Y +P+ G
Sbjct: 5436 SGKPLS-QDGSPLPTDASGNYILVPSDG 5462
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 489 SGRPLTFTGGSPLPT-GAGTYGRIPA 563
SG+PL+ GGSPLPT G Y +PA
Sbjct: 8901 SGKPLSADGGSPLPTDNNGNYVLVPA 8926
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 489 SGRPLTFTGGSPLPTGA-GTYGRIPASG 569
SG+PL+ GSPLPT A G Y +P+ G
Sbjct: 5481 SGKPLS-QDGSPLPTDASGNYILVPSDG 5507
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 489 SGRPLTFTGGSPLPT-GAGTYGRIPA 563
SG+PL+ GGSPLPT G Y +PA
Sbjct: 8901 SGKPLSADGGSPLPTDNNGNYVLVPA 8926
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 489 SGRPLTFTGGSPLPTGA-GTYGRIPASG 569
SG+PL+ GSPLPT A G Y +P+ G
Sbjct: 5481 SGKPLS-QDGSPLPTDASGNYILVPSDG 5507
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.71
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +1
Query: 115 PKDFRTHPLND-SPALLHPTSDPLRGQNPDEVGGLPRSTLQPEGAAHPKDAQPTE-PSRR 288
P P N+ SP + P+ +P P P QP G P P+E P
Sbjct: 77 PTSVVPQPSNEPSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPS 136
Query: 289 IEGSETSAVSVRQPVGPP 342
+E SE QP GPP
Sbjct: 137 VEPSED-----HQPSGPP 149
>AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical
protein C30F12.5 protein.
Length = 392
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 109 RGPKDFRTHPLN----DSPALLHPTSDPLRGQNPDEVGGLPRSTLQPEGAAHP 255
+G KD+ + D P + HP PL +P G +PR+ L P GA P
Sbjct: 303 KGQKDYENGSMGQLPIDEPRIGHPLYSPLPPIDPT-YGTIPRARLAPNGAPPP 354
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 308 RPSQYGSPSGRPD-GAAGVPEYPAGPEPACRDGTR 409
+P + GSP D G AG P +P G P DG R
Sbjct: 262 QPGKDGSPGDAGDNGTAGSPGHPGGEGPVGPDGAR 296
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 209 GGYRGQHYNQRARLTPRTPSRRSLRGESKALKRRPSQYGSPSGRPDGAAGV---PEYPAG 379
G Y HYN ++ R + L+ E K L+ RP S SG+P P++P+G
Sbjct: 194 GNYEKGHYNVFDQMQWRKIPKE-LKLEYKELEDRPKMPQSVSGQPTPYKYFFQGPQFPSG 252
Query: 380 PE 385
PE
Sbjct: 253 PE 254
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 209 GGYRGQHYNQRARLTPRTPSRRSLRGESKALKRRPSQYGSPSGRPDGAAGV---PEYPAG 379
G Y HYN ++ R + L+ E K L+ RP S SG+P P++P+G
Sbjct: 244 GNYEKGHYNVFDQMQWRKIPKE-LKLEYKELEDRPKMPQSVSGQPTPYKYFFQGPQFPSG 302
Query: 380 PE 385
PE
Sbjct: 303 PE 304
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 209 GGYRGQHYNQRARLTPRTPSRRSLRGESKALKRRPSQYGSPSGRPDGAAGV---PEYPAG 379
G Y HYN ++ R + L+ E K L+ RP S SG+P P++P+G
Sbjct: 321 GNYEKGHYNVFDQMQWRKIPKE-LKLEYKELEDRPKMPQSVSGQPTPYKYFFQGPQFPSG 379
Query: 380 PE 385
PE
Sbjct: 380 PE 381
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.2
Identities = 35/144 (24%), Positives = 50/144 (34%)
Frame = +3
Query: 141 KRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRGRGSPQGRPADGAFEANRRL*NVGRLS 320
+R P T +P SPP P G + ++ R P+G P G R+ S
Sbjct: 341 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRK-------S 393
Query: 321 TAARRAAQTVPLVSRNTPLDQNQPAGTGRDTLSTGRSIHSTXXXXXXXXXXXXLTPSGRP 500
+ ++ P R +P + P G+ TGR + P
Sbjct: 394 SEESSESREEPRGPRRSPPTGSPPTGSP----PTGRPPRGSPPTGSPPTGLPSRQKRQAP 449
Query: 501 LTFTGGSPLPTGAGTYGRIPASGP 572
GSP PTG+ GR GP
Sbjct: 450 EDRPTGSP-PTGSPPTGRPHRGGP 472
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.2
Identities = 35/144 (24%), Positives = 50/144 (34%)
Frame = +3
Query: 141 KRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRGRGSPQGRPADGAFEANRRL*NVGRLS 320
+R P T +P SPP P G + ++ R P+G P G R+ S
Sbjct: 362 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRK-------S 414
Query: 321 TAARRAAQTVPLVSRNTPLDQNQPAGTGRDTLSTGRSIHSTXXXXXXXXXXXXLTPSGRP 500
+ ++ P R +P + P G+ TGR + P
Sbjct: 415 SEESSESREEPRGPRRSPPTGSPPTGSP----PTGRPPRGSPPTGSPPTGLPSRQKRQAP 470
Query: 501 LTFTGGSPLPTGAGTYGRIPASGP 572
GSP PTG+ GR GP
Sbjct: 471 EDRPTGSP-PTGSPPTGRPHRGGP 493
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.2
Identities = 35/144 (24%), Positives = 50/144 (34%)
Frame = +3
Query: 141 KRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRGRGSPQGRPADGAFEANRRL*NVGRLS 320
+R P T +P SPP P G + ++ R P+G P G R+ S
Sbjct: 347 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRK-------S 399
Query: 321 TAARRAAQTVPLVSRNTPLDQNQPAGTGRDTLSTGRSIHSTXXXXXXXXXXXXLTPSGRP 500
+ ++ P R +P + P G+ TGR + P
Sbjct: 400 SEESSESREEPRGPRRSPPTGSPPTGSP----PTGRPPRGSPPTGSPPTGLPSRQKRQAP 455
Query: 501 LTFTGGSPLPTGAGTYGRIPASGP 572
GSP PTG+ GR GP
Sbjct: 456 EDRPTGSP-PTGSPPTGRPHRGGP 478
>Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical
protein ZK512.8 protein.
Length = 171
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +1
Query: 148 SPALLHPT--SDPLRGQNPDEVGGLPRSTLQPEGAAHPKDAQPTEPSRRIEGSETSAVSV 321
SP H + S+P + DE+ L R + + HP + + +P + E S TSA S
Sbjct: 43 SPVSTHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSN 102
Query: 322 RQ-PVGPPRRCRWCPGIP 372
PV P G+P
Sbjct: 103 SSLPVRSPAIMTLMGGVP 120
>Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical
protein Y57G11C.6 protein.
Length = 482
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 213 ATAVNTTTRGRGSPQGRPADGAFEANRRL*NVGRLSTAARRAAQTVPLVSRNTPLDQNQP 392
AT+V T G P PA+ A + + + N G+ S A +A P VS + + +
Sbjct: 107 ATSVAGTVTTTGMPALLPAENATQPLKEVVNSGKKSKGAPNSATATP-VSHKSTITEGAD 165
Query: 393 AGTGRD 410
G D
Sbjct: 166 KWVGED 171
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -1
Query: 402 PSRQAGSGPAGYSGTPAAP--SGRPDGLPY*DGRR 304
P +GPAG +G P AP G+P G P DG+R
Sbjct: 165 PGPAGPAGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 384 SGPAGYSGTPAAPSGRPDGLPY*DG 310
+GPAG G P AP PDG P DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 254 PRTPSRRSLRGESKALKRRPSQYGSPSGRPDGAAGVPEYPAGPEPA 391
P+ P + + + P+Q +P+G+P G G+P P PA
Sbjct: 311 PQYPQGTNPQPQQAQFTYPPTQQMTPTGQPPGYPGMPGTPTFSSPA 356
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 254 PRTPSRRSLRGESKALKRRPSQYGSPSGRPDGAAGVPEYPAGPEPA 391
P+ P + + + P+Q +P+G+P G G+P P PA
Sbjct: 309 PQYPQGTNPQPQQAQFTYPPTQQMTPTGQPPGYPGMPGTPTFSSPA 354
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 402 PSRQAGSGPAGYSGTPAAP--SGRPDGLPY*DGRR 304
P +GPAG +G P AP G+P G P DG R
Sbjct: 165 PGPAGPAGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 402 PSRQAGSGPAGYSGTPAAPSGR-PDGLPY*DGRRFR 298
P +GP G +GTP P + DG P +GRR R
Sbjct: 167 PGAPGVAGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
>U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical
protein F11G11.5 protein.
Length = 223
Score = 27.9 bits (59), Expect = 8.8
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Frame = +1
Query: 166 PTSDPLRGQNPDEVGGLPRSTLQPEGAAHPKDAQPTEPSRR------------IEGSETS 309
P PL P + G + S+ QP + P+ QPT PSR I+ S
Sbjct: 7 PVKQPLPDSPPTDEG-MSSSSAQPSAPSAPEQ-QPTSPSRPPPPAGFVYPSTDIQNSSEV 64
Query: 310 AVSVRQPVGPP 342
VS P GPP
Sbjct: 65 HVSAPVPAGPP 75
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 146 SFSGWVLKSLGPRSAHNTM*IVESHIPRAPLLRG 45
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 146 SFSGWVLKSLGPRSAHNTM*IVESHIPRAPLLRG 45
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370
>AL132860-25|CAB60510.1| 413|Caenorhabditis elegans Hypothetical
protein Y56A3A.31 protein.
Length = 413
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 399 SRQAGSGPAGYSGTPAAPSGRP 334
S AGS P G +GTP+A S P
Sbjct: 23 SNSAGSSPPGAAGTPSAASQTP 44
>AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical
protein Y56A3A.4 protein.
Length = 342
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 224 QHYNQRARLTPRTPSRRSLRGESKALKRRPSQYGSPSGRPDGAAGVPEYPAGPEP 388
QH+ Q + P + + G+S +++RP Q G G P + + GP P
Sbjct: 100 QHFQQMGIPQQQQPQQFTPNGQSMQMQQRPMQMGMAQG-PGPSGHLMGMVGGPPP 153
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -1
Query: 381 GPAGYSGTPAAPSGRP-DGLPY*DGRRFRAFD 289
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 146 SFSGWVLKSLGPRSAHNTM*IVESHIPRAPLLRG 45
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,110
Number of Sequences: 27780
Number of extensions: 380406
Number of successful extensions: 2112
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2097
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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