Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_K18
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.9  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   2.5  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   4.3  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   7.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   7.5  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   7.5  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    25   9.9  

>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 704 RPSGVVYRGPVKAPKCPHPHPHR--YSNAPXARNA 606
           RPS V+   PV   +  HP PH+  Y   P  RN+
Sbjct: 375 RPSAVLLDKPVSLDQTSHPFPHQNTYILPPGIRNS 409


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -1

Query: 701 PSGVVYRGPVKAPKCPHPHPHRYSNAPXARNAWKIRISCSAPANRTISSVSPAPGTRSRD 522
           PS  V   P+ A     P P+ Y   P A+  + +    S P+N  + S   APG ++  
Sbjct: 13  PSASVVTAPLPAT-IALPSPNYYY-PPVAQGHYPVNNMWSLPSNVRVISSHGAPGHQTSA 70

Query: 521 SRDPRCTVPA-ERNA 480
           S+ P   +PA E NA
Sbjct: 71  SQ-PSTVMPALETNA 84


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -1

Query: 251 STVTISVRSTNLTIDSISLPDDRRNASWTSFGDSCARRASDDAPVMFRMRFTLVL 87
           +T+  + +S+   +D  +L  D    SW  F DSC    +  +P   ++  T ++
Sbjct: 233 TTINSAAKSSFTWLDGNALLQDTNGLSWQQFIDSCLLCGTAISPTFPQIEGTFLI 287


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 119 RERRRTPAAHKNHQTKSTMHF 181
           R R+R P  HKNHQ    M F
Sbjct: 126 RRRKRHPNLHKNHQRLLGMSF 146


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -1

Query: 650 PHPHRYSNAPXARNAWKIRISCSAPANRTI--SSVSPAPGTRSRDSRDPRCTVP-AERNA 480
           P P    NAP    + ++    S P    +  SS +PA  TR+   R+P    P + R  
Sbjct: 735 PGPSLQVNAPYTPTSGELGNKVSNPTKEFVSTSSYAPAANTRNAIIREPGILSPLSPRVQ 794

Query: 479 PWRARR 462
           P  +RR
Sbjct: 795 PVLSRR 800


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 113 TLRERRRTPAAHKNHQTKSTMHFADRREVKSN 208
           +L  R+  PA  K H+  S     D+ EVK N
Sbjct: 788 SLSRRKSMPAEIKRHKESSETKPVDKEEVKKN 819


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 425 IVAISPCMNAHGTVELARGHFSPLGQYTSDPCCLLI 532
           I+AIS C    G  +   GHFSP+G ++     +LI
Sbjct: 180 IMAISFCRKVLG--QTGDGHFSPVGGFSESDNKILI 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,593
Number of Sequences: 5004
Number of extensions: 67555
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)