Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_K16
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    31   0.71 
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    31   0.71 
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical ...    30   2.2  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   8.8  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   8.8  

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -3

Query: 708  NPPSPXXSXTS-TRSSNPXFHTPTTPDL--TSISINPLTPX*KEFAPGLKPPLSSEAPSA 538
            +P SP  S TS + S     ++PT+P    TS S +P +P     +P   P   S +PS+
Sbjct: 1606 SPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSS 1665

Query: 537  YLTPSSLGMXKGVSPPY 487
                 S       SP Y
Sbjct: 1666 PSYSPSSPRYSPTSPTY 1682


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -3

Query: 708  NPPSPXXSXTS-TRSSNPXFHTPTTPDL--TSISINPLTPX*KEFAPGLKPPLSSEAPSA 538
            +P SP  S TS + S     ++PT+P    TS S +P +P     +P   P   S +PS+
Sbjct: 1613 SPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSS 1672

Query: 537  YLTPSSLGMXKGVSPPY 487
                 S       SP Y
Sbjct: 1673 PSYSPSSPRYSPTSPTY 1689


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -3

Query: 702 PSPXXSXTSTRSSNPXFHTPTTPDLTSISINPLTP---X*KEFAPGLKPPLSSEAPSAYL 532
           P+P  + T+T  +NP   TPTT  + +I  +P  P        AP + P  S+ AP+A +
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAP-VNPTSSTTAPTAPV 546

Query: 531 TPSS 520
            P+S
Sbjct: 547 NPTS 550


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -3

Query: 702 PSPXXSXTSTRSSNPXFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPS 523
           P+P  + T+T  +NP   TPTT   TS   N ++P        +     + AP    +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548

Query: 522 SLGMXKGVSPP 490
           +       S P
Sbjct: 549 TTPTHTTASQP 559


>AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical
           protein F49F1.1 protein.
          Length = 265

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -3

Query: 702 PSPXXSXTSTRSSNPXFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPS 541
           P+   S ++  +  P   T  TP+LT++++ P+T   K     + P  +++ P+
Sbjct: 160 PATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 564  PLSSEAPSAYLTPSSLGMXKGVSPP 490
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 564  PLSSEAPSAYLTPSSLGMXKGVSPP 490
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,929,648
Number of Sequences: 27780
Number of extensions: 319835
Number of successful extensions: 1052
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)