Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_K11
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    31   0.20 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.62 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.5  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   4.4  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   4.4  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    27   4.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.8  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 508 NLHPPAEPEHRRIARHERTGRLILQVTTNSDV 603
           NL  PAE +HRR+ R +R G L   +  NS +
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPLDKDLKPNSKI 266


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 386  PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASP-DTNA 562
            P T+ T +   PP+          P  ++    TST  T  T +    P T+++  +T+ 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 563  P 565
            P
Sbjct: 1703 P 1703



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
 Frame = +2

Query: 371 PQQILPATTQTTILRVP-PLLHDVTPTLRKPT--------ANTCQARTSTHFTGKTCIRQ 523
           P   L  ++ TTI     P  + +     KPT        ANT    TST  T  T +  
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380

Query: 524 RNPNTAAS 547
             P T++S
Sbjct: 381 STPITSSS 388


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
 Frame = +1

Query: 175 SAGAPISAVRAGGVISSFGGPVGRPPLQSRRSARFSRTGWAATAEVSPPATCADSQDILP 354
           S+ + IS+  +    SSF          S+ S+ FS T  ++++  S   T + S    P
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTS----SSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRP 393

Query: 355 PCKLLTATNLTSHHANYNFTGSTS-LTRCYSHTEEANREHLSSTHKHALHRKNLHP 519
                 +++L+SH ++ +   S++ ++  + H   ++R   S +  H+L   +  P
Sbjct: 394 ASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSS-SHSSSHSLSSLSSKP 448


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 653 KQANKKASKFPWGRKIDTSEFVVTCKIRRPVRS 555
           K  N+ + +FP+  KI       TCK  +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 370 TATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIA 549
           T T   S    ++ + S S +    H  +  +E   S H+H  HR++     EP    ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163

Query: 550 RHER 561
           RH R
Sbjct: 164 RHHR 167


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 234 TRRPASVTVEAICPVLADWVGRDRGSLTSGYLCR 335
           TR+ + + ++A+CPVL + VG     LT   L R
Sbjct: 362 TRKLSEIVLDALCPVLPELVG-GSADLTPSNLTR 394


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 354  TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GSQPRTLVKHAQART 497
            TM  + ++K     RKL+    HL +  L+ H   QP    +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,899
Number of Sequences: 5004
Number of extensions: 69059
Number of successful extensions: 230
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)