Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_K09
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    28   1.8  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.2  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.5  

>SPBC3B9.15c |scp1||sterol regulatory element binding protein
            Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -2

Query: 727  FKFGXRMHNSDEMDFVI--DKKNIQYVRVRSVGC 632
            F+   ++ NSDEMD ++   +KN+Q  R  ++GC
Sbjct: 1053 FRDFYQIRNSDEMDRILRRKRKNLQRKRSGTIGC 1086


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 340 LRSLISNLSNTCDLTPLPEWSCEQSAW 260
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 558 HLEHCHASFHLATGPGSAPHWTEPSHPTLLTRTYCIFFLSITKSISSLLCILXPNLN 728
           +L +CH    L   P   P + +PS    +T       +  +K ISS L +L PN++
Sbjct: 135 YLLNCHEQGSLIEEP--RPLFLDPSWKEKVTSIMSPQMVDPSKMISSCLSLLQPNVD 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,259
Number of Sequences: 5004
Number of extensions: 31335
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)