Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_K09
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of ...    29   5.1  
U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of ...    29   5.1  
U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of ...    29   5.1  
AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical...    29   5.1  
AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gat...    29   5.1  
AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical ...    28   9.0  

>U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform c protein.
          Length = 442

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 793 LDISTPIFMQLXNXPNDMXTCTFKFGXRMHNSDEMD 686
           L + +P  + L   P D  TC   F    HNS+E++
Sbjct: 153 LSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform a protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 793 LDISTPIFMQLXNXPNDMXTCTFKFGXRMHNSDEMD 686
           L + +P  + L   P D  TC   F    HNS+E++
Sbjct: 153 LSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform b protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 793 LDISTPIFMQLXNXPNDMXTCTFKFGXRMHNSDEMD 686
           L + +P  + L   P D  TC   F    HNS+E++
Sbjct: 153 LSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical
           protein Y39B6A.25 protein.
          Length = 542

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 561 LEHCHASFHLATGPGSAPHWTEPSHPTLLTRTYCIFFLSITKSISSL 701
           +E C A F +       PH  +  HPT+  R  C  F    + ++ L
Sbjct: 210 IEECQALFRVEIKSVDEPHLIDLYHPTIAGRNVCQQFFRRPEDVAKL 256


>AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gated
           chloride channel protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 793 LDISTPIFMQLXNXPNDMXTCTFKFGXRMHNSDEMD 686
           L + +P  + L   P D  TC   F    HNS+E++
Sbjct: 153 LSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical
           protein Y71D11A.5 protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 793 LDISTPIFMQLXNXPNDMXTCTFKFGXRMHNSDEMDFVIDKKNIQYVR 650
           L +  P  M L   P D  TC+  F    +N+DE+        +Q +R
Sbjct: 184 LKLQGPCIMDLTKFPFDNVTCSLTFESFNYNTDEVKMDWSVNGVQKMR 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,211,343
Number of Sequences: 27780
Number of extensions: 190207
Number of successful extensions: 526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)