Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_K09
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    28   0.088
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   1.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   1.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 0.088
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 751 PNDMXTCTFKFGXRMHNSDEMDFVIDKK 668
           P D   C   FG  +H+ +E++  +DKK
Sbjct: 177 PYDTHRCRINFGSWVHSGEEVNIFLDKK 204


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 334 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 236
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 751 PNDMXTCTFKFGXRMHNSDEMDFVI-DKKN 665
           P D  TC  KFG    N D++   + + KN
Sbjct: 159 PFDQQTCIMKFGSWTFNGDQVSLALYNNKN 188


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 660 CIFFLSITKSISSLLCILXPNLNV 731
           C+FFL+   S + +LC   P+ N+
Sbjct: 434 CVFFLTTIVSTTVILCGSPPSANI 457


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 751 PNDMXTCTFKFGXRMHNSDEMDFVIDKKNIQYVR 650
           P D+    FK+G   H +    + +D KN++Y R
Sbjct: 655 PQDIENI-FKYGYVSHANQRNMYKLDLKNMKYTR 687


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 751 PNDMXTCTFKFGXRMHNSDEMDFVIDKKNIQYVRVRSV 638
           P D  TC  KFG   ++     F +D ++I  +R ++V
Sbjct: 157 PFDEQTCVMKFGSWTYDG----FQVDLRHIDEIRGKNV 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,093
Number of Sequences: 438
Number of extensions: 2126
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)