Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_K05
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   204   9e-54
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   203   3e-53
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    43   5e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.6  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   7.6  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  204 bits (499), Expect = 9e-54
 Identities = 100/149 (67%), Positives = 114/149 (76%)
 Frame = -2

Query: 774 IETPXDVXVXSSRPFGQRAVLKFAAHTGATXIAXRFTPGAFTNQIQAAFREPRLLIVLDP 595
           IE P DV V SSRP+G RAVLKFAAHTGAT IA RFTPG FTN I   +REPRL+IV DP
Sbjct: 71  IENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDP 130

Query: 594 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMSWLLAREVLRLRG 415
             D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL  +LLAREVLRLRG
Sbjct: 131 RADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRG 190

Query: 414 VLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
            + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 191 NISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  203 bits (495), Expect = 3e-53
 Identities = 99/151 (65%), Positives = 114/151 (75%)
 Frame = -2

Query: 774 IETPXDVXVXSSRPFGQRAVLKFAAHTGATXIAXRFTPGAFTNQIQAAFREPRLLIVLDP 595
           IE P DV V S+R +G RAVLKFAAHTGAT IA RFTPG FTN I   +REPRL++V DP
Sbjct: 70  IENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDP 129

Query: 594 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMSWLLAREVLRLRG 415
             D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+ +LLAREVLR+RG
Sbjct: 130 RADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRG 189

Query: 414 VLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 322
            L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 190 TLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 20/62 (32%), Positives = 34/62 (54%)
 Frame = -2

Query: 621 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMSWLL 442
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L++ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 441 AR 436
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 403 TGKHTTKPQHFTCQQPRHQTNRVGRLGVAW 492
           TG +  K   F+ +Q R+ T+ + +LGV W
Sbjct: 417 TGNYDFKAAGFSEEQLRNLTSDMAKLGVCW 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,729
Number of Sequences: 5004
Number of extensions: 57688
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)