Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_K04
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0023 - 7151465-7152111,7152222-7152405                           30   2.0  
07_03_0324 + 16803652-16803990,16804001-16804054,16804264-168042...    30   2.0  

>10_03_0023 - 7151465-7152111,7152222-7152405
          Length = 276

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +1

Query: 475 PXFXPPXXXSPXPSTLSXPXXLLXLLXXXPXXXXPPXXXXP 597
           P   PP    P PS+L  P   L LL   P    PP    P
Sbjct: 210 PSILPPLTPQPPPSSLIPPVLPLPLLNPPPPPPPPPSLLPP 250


>07_03_0324 +
           16803652-16803990,16804001-16804054,16804264-16804269,
           16804657-16804731,16804864-16804983,16806571-16806762,
           16806994-16807077,16807167-16807256,16807832-16807885,
           16808006-16808085,16808523-16808633,16808707-16808761,
           16808799-16808858
          Length = 439

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -1

Query: 475 AGXGGQAHXGXSRV-QXRXXXGAXAXCXAAAXVCXVQXCRRAPPP 344
           A  GG  H G SRV   R   GA      A+     Q  RRAPPP
Sbjct: 9   AAAGGLLHLGASRVPSRRPSAGAAPRLRGASCARGRQPRRRAPPP 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,182,470
Number of Sequences: 37544
Number of extensions: 151712
Number of successful extensions: 517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)