Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_K03
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 32 0.46
05_06_0122 - 25775652-25775936,25776027-25776103,25776177-257762... 30 1.9
12_02_1174 - 26696869-26698191 29 4.3
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 29 4.3
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 4.3
07_03_1750 - 29207692-29208225 29 5.7
05_01_0570 + 5061600-5062142,5062790-5062972 29 5.7
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 29 5.7
02_05_0781 + 31715100-31715672 28 7.5
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 28 9.9
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 28 9.9
08_01_0554 - 4851698-4851943,4852041-4852760 28 9.9
05_07_0104 + 27715123-27715350 28 9.9
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 28 9.9
02_05_0903 - 32630190-32630461,32631084-32631470,32631727-326318... 28 9.9
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 32.3 bits (70), Expect = 0.46
Identities = 21/50 (42%), Positives = 23/50 (46%)
Frame = +3
Query: 129 RAHPLNDSPXTLTPDVRSPSGVRTRSE*GGSRGQHYNQTRGATPRTPDRR 278
R P TLTP RSPS R S G N TRGA+P +RR
Sbjct: 141 RRSPTPPGNKTLTPPRRSPSPASRRMS-ATSSGPTLNGTRGASPVKTNRR 189
>05_06_0122 -
25775652-25775936,25776027-25776103,25776177-25776281,
25776353-25776542,25776617-25776804,25776882-25777191
Length = 384
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = +2
Query: 239 PDTRRHPEDARP-TGRRGDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQNQPAGSERD 415
P HP D +P T S P T Q+A A ++ P G AG +
Sbjct: 11 PSVEDHPSDNQPATDNVEPSNEPPTG-------NQSAEAEVGANQEPPTGNQSDAGPSQK 63
Query: 416 TPPTGLLFNSMFGDDSDDEN 475
P NS G D+D E+
Sbjct: 64 VPEVEAQTNSPLGKDADSES 83
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Frame = +2
Query: 134 PPTKRLPXHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPED----ARPTGRRGDSRR 301
PP + P Y P ++ + G P S+ P T+ P P GD R
Sbjct: 302 PPPPQQPSQRYWTPPPAITPEPAKPAAGKPTSSSPPSTKDSPRPPLPAPSPAANGGDPRL 361
Query: 302 PTTSVSAVRRPYQAARAVPLVFRDTPLGQNQPAGSERDTPP 424
P T+ + ++ + R +G+ A +E + PP
Sbjct: 362 PATTPLSKQKRKEEKREK----EAQEMGRAGAAAAEEERPP 398
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 196 EPVQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STTNDVG 315
E + +RG T +HA PPRG P G + D G
Sbjct: 119 EKMMTRGRAETETARKHAPPPRGLPLLGEALTPQRKADAG 158
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 177 RSPSGVRTRSE*GGSRGQHYNQTRGATPR 263
+ PS +R+R GSRG+ Y+Q +PR
Sbjct: 122 KKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>07_03_1750 - 29207692-29208225
Length = 177
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/73 (30%), Positives = 27/73 (36%)
Frame = -1
Query: 223 REPPYSERVLTPDGDRTSGVRVXGESFSGWALKSLGPRSALNTCRSLSLTYPARPLGAGT 44
R P S R + DR V G S W+ L R+ R + L P P A
Sbjct: 51 RPSPASSREVRHAADRALAVAARGRS--RWSRAILASRARACALRRVRLGAPPPPPAARP 108
Query: 43 S*EVRPPARKKKK 5
+ RPP K K
Sbjct: 109 APRSRPPLASKAK 121
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 209 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTS 313
VGG ++ RR P TG G +RRPT++
Sbjct: 159 VGGARGRAVRGSARRRPRKEETTGINGTARRPTST 193
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 175 SDLRPGSEPVQSRGVPAVNTTTRHAAPPR--GRPTDGSSRR*STTN-DVG 315
S+ +PG PV++ G+ + +T R PPR G P S R S++ D+G
Sbjct: 416 SESQPGQAPVRTGGMRLMTSTGRDNQPPRSSGVPPSPSEWRSSSSRWDLG 465
>02_05_0781 + 31715100-31715672
Length = 190
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 202 VQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STT 303
V + P RHAA P RP+ +SRR STT
Sbjct: 51 VSAAAQPQRAAKKRHAAAPPPRPSASTSRRSSTT 84
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -1
Query: 412 AFRPGRLVLAQRGIPEHQRHRPGGLVGPPYRG 317
AFR L A RG E Q+ GG GP YRG
Sbjct: 47 AFRYEALSAATRGFSERQKLGQGGF-GPVYRG 77
>09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 71 PRAPPRRGDLVGGSAPGP 18
P PP+ G LVGGS P P
Sbjct: 1200 PATPPKGGPLVGGSLPCP 1217
>08_01_0554 - 4851698-4851943,4852041-4852760
Length = 321
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 344 ARAVPLVFRDTPLGQNQPAG-SERDTPPTGLLFNSMFGDD 460
AR + F D LG N PAG E DTP LL F DD
Sbjct: 164 ARERGMSFGDALLGNNHPAGLREIDTP---LLDEKFFSDD 200
>05_07_0104 + 27715123-27715350
Length = 75
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 303 GRRLSPRRPVGRASSGWRRVS 241
GRRL P P R W RVS
Sbjct: 31 GRRLHPPAPAARGGGAWNRVS 51
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 481 PHRSPQPPTRRPVLLVPAR*SDGSVRRSLNP---LRSPRDHHREETAS 615
P R P+PP++ P L PA D + +NP R D HR + S
Sbjct: 41 PRRHPEPPSKSP--LHPAYTPDAQGQSPMNPQHGRRQEADPHRRHSLS 86
>02_05_0903 -
32630190-32630461,32631084-32631470,32631727-32631817,
32632320-32632492,32632671-32632842
Length = 364
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 608 PPPHRGWSWTNALLRTRLDGGGTA 679
PPP W W L T GGG A
Sbjct: 21 PPPQLDWDWDQLQLHTLGGGGGDA 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,348,039
Number of Sequences: 37544
Number of extensions: 485704
Number of successful extensions: 1897
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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