Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_K03
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.15 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.35 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.47 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.47 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.3  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   7.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 272 PTGRRGDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQNQPA 400
           PT R     +P      ++RP   A + P  F   PLG  +PA
Sbjct: 289 PTYRMQQVEQPVQVYIQLKRPSDGATSEPFPFLMLPLGAGRPA 331


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +2

Query: 272 PTGRRGDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQNQPAGSER 412
           PT R     +P      ++RP   A + P  F   PLG + P    R
Sbjct: 289 PTYRMQQVEQPVQVYIQLKRPSDGATSEPFPFLMLPLGADDPDSLRR 335


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 66  AGYVRLNDLQVLRADRGPKDFRAH--PLNDSPXTLTPDVRSPSGVRTRSE*GGSRGQHYN 239
           +GY ++  LQVL A   P+DF  +   L+D   TL P +R+PS   T     G+   HY 
Sbjct: 81  SGYDKI--LQVLGAT--PRDFLQNLDALHDHLGTLYPGMRAPSFRCTERPEDGALILHYY 136

Query: 240 QTR 248
             R
Sbjct: 137 SDR 139


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 66  AGYVRLNDLQVLRADRGPKDFRAH--PLNDSPXTLTPDVRSPSGVRTRSE*GGSRGQHYN 239
           +GY ++  LQVL A   P+DF  +   L+D   TL P +R+PS   T     G+   HY 
Sbjct: 81  SGYDKI--LQVLGAT--PRDFLQNLDALHDHLGTLYPGMRAPSFRCTERPEDGALILHYY 136

Query: 240 QTR 248
             R
Sbjct: 137 SDR 139


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 608 PPPHRGWSWTNALLR 652
           PPP RG  WT   LR
Sbjct: 378 PPPIRGGEWTFDTLR 392


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 92  QIVESHIPRAPP 57
           Q+  SHIP APP
Sbjct: 97  QVQGSHIPTAPP 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,011
Number of Sequences: 438
Number of extensions: 3548
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)