Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_K01
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1310 + 29238644-29240260 36 0.035
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999... 29 3.0
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.0
09_04_0220 - 15813809-15815380 29 4.0
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.3
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 29 5.3
08_02_1615 + 28257275-28258428,28258523-28259144 28 7.0
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 28 7.0
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 28 7.0
02_05_0693 - 30977323-30977421,30977783-30977843,30978874-309789... 28 9.3
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.3
>06_03_1310 + 29238644-29240260
Length = 538
Score = 35.9 bits (79), Expect = 0.035
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 673 HQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPS-SLGMAKGVSP 497
H+ P H PP+ P P P +P P PP SE+P + + PS S + G SP
Sbjct: 381 HRSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSSMPPSTSPPSSHGASP 438
Query: 496 P 494
P
Sbjct: 439 P 439
>06_01_1169 +
9996068-9996265,9996356-9998589,9998675-9998926,
9999007-9999117,9999207-9999288,9999563-9999754
Length = 1022
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 712 SHXPLRXRXHQPDHQIPDSIHQPP-QT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPS 545
S PLR QP P QPP T P + P +P K+ AP PP+ + P+
Sbjct: 584 SPPPLRSPPRQPTPP-PSPSQQPPLPTPQPVQASPTSPT-KQHAPPAPPPVQTSPPT 638
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 84 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 185
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0220 - 15813809-15815380
Length = 523
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = -1
Query: 318 ELALKVSSIIGTRVYVFDPSCYF---STPPFGT-VLYDNIRTVLKDNKTALLSASIQASL 151
EL V+ ++G F P CYF T GT +YD ++ L + A + S
Sbjct: 29 ELRAAVARLLGRATRAFSPYCYFDVTETEGMGTNEIYDAVQLYLSSSAAPAAGARLTLSR 88
Query: 150 P 148
P
Sbjct: 89 P 89
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 76 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 222
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -3
Query: 628 PFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLT--PSSLGMAKGVSPP 494
P P P P APG P S P+ Y T P G G PP
Sbjct: 158 PLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPP 204
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -3
Query: 682 QPDHQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGV 503
QP H H PQ+ HP P P AP PP S P ++ + L K +
Sbjct: 32 QPPHSHLLHHHHSPQS-HPQPDAPAAAAPPPPAPLTPPPPKSPPPPPHIQTTDLPPPKPL 90
Query: 502 SP 497
P
Sbjct: 91 PP 92
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 243 PPFGTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 64
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 63 ILHSF 49
+LHSF
Sbjct: 1408 LLHSF 1412
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 724 PYASSHXPLRXRXHQPDHQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKP 569
P S P + H P Q+P PP P PS+P P +AP +P
Sbjct: 284 PTLQSQPPSQYPGHLPHSQVPPV---PPSA--PVPSVPALPRDPYYAPPAQP 330
>02_05_0693 -
30977323-30977421,30977783-30977843,30978874-30978996,
30979258-30979340,30979847-30979924,30980375-30980506,
30980685-30980728,30980966-30981090,30981468-30981769,
30981877-30981994,30982444-30982574,30983082-30983276,
30983362-30983646
Length = 591
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -1
Query: 291 IGTRVYVFDPSCYFSTPPFGTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQL 124
+G RVY FD + GTV+++NI + + +I +L S E+Y ++
Sbjct: 310 MGVRVYGFDETSSIPMDGSGTVMWENIAGYEPQKRE--IEDTILLALQSPEVYDEI 363
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 444 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 355
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,929,991
Number of Sequences: 37544
Number of extensions: 439243
Number of successful extensions: 1310
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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