Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_J24
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0328 - 20303330-20303440,20304123-20304942,20305170-203053...    30   2.7  

>05_04_0328 -
           20303330-20303440,20304123-20304942,20305170-20305368,
           20305417-20305954
          Length = 555

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 412 IKNSQRSQCDT--TSKTNTHQVVQTRQX*GGSVTQLRINMHYINDVPHITA 558
           IK  Q  QC+T  T++TNT QV++ +      + +L+I +  +  + +I +
Sbjct: 483 IKKEQLLQCETFNTTQTNTEQVIKLQVSNSKEIQELQIKLQILKSLWNINS 533


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,068
Number of Sequences: 37544
Number of extensions: 332290
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)