Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_J24
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    31   1.0  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    31   1.0  
Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GA...    28   7.4  
AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GA...    28   7.4  
AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion def...    28   7.4  
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = +3

Query: 684 PGPFGAXPDLXXP---APGENXXDPAXEPPLVXGXDXPRGSPGNXQG 815
           PG  G  P    P   AP      P   PPL+ G   PRG PG   G
Sbjct: 127 PGGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGG 173


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = +3

Query: 684 PGPFGAXPDLXXP---APGENXXDPAXEPPLVXGXDXPRGSPGNXQG 815
           PG  G  P    P   AP      P   PPL+ G   PRG PG   G
Sbjct: 407 PGGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGG 453


>Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical
           protein T05A1.2 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 678 LXPGPFGAXPDLXXPAPGENXXDPAXEPPLVXGXDXPRGSPG 803
           L P P  A P     APG      +  PP   G D P G PG
Sbjct: 141 LTPPPCPACPPGPPGAPGAPGKPGSEGPPGPPGHDGPNGGPG 182


>Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical
           protein F08G12.3 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 293 SIQPKHINSSIYYDKNI 343
           S+QP H +S  YYD+NI
Sbjct: 61  SVQPNHTSSPAYYDENI 77


>AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GABA
           receptor EXP-1A protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 387 VSNLELHRYHWIKDVIFLS*YIDEFICFGCILNYELYFKLLLISI 253
           ++   +HR+HWI  ++F       F+ F C+  + +Y  L ++S+
Sbjct: 478 ITQRTMHRFHWISQMLFFF----GFVIF-CLFYFLIYPNLHIVSV 517


>AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GABA
           receptor EXP-1B protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 387 VSNLELHRYHWIKDVIFLS*YIDEFICFGCILNYELYFKLLLISI 253
           ++   +HR+HWI  ++F       F+ F C+  + +Y  L ++S+
Sbjct: 484 ITQRTMHRFHWISQMLFFF----GFVIF-CLFYFLIYPNLHIVSV 523


>AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion
           defective (defecation)protein 1 protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 387 VSNLELHRYHWIKDVIFLS*YIDEFICFGCILNYELYFKLLLISI 253
           ++   +HR+HWI  ++F       F+ F C+  + +Y  L ++S+
Sbjct: 484 ITQRTMHRFHWISQMLFFF----GFVIF-CLFYFLIYPNLHIVSV 523


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 684 PGPFGAXPDLXXPAPGENXXDPAXE-PPLVXGXDXPRGSPG 803
           PGP GA  +   P P      P  + PP V G   P G PG
Sbjct: 232 PGPPGAPGNDGPPGPPGPKGAPGPDGPPGVDGQSGPPGPPG 272


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 684 PGPFGAXPDLXXPA-PGENXXDPAXEPPLVXGXDXPRGSPG 803
           PGP GA  +      PG+N       PP   G +  RG+PG
Sbjct: 234 PGPMGARGEPGHRGLPGDNGMPGPMGPPGYRGDNGRRGAPG 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,420
Number of Sequences: 27780
Number of extensions: 314232
Number of successful extensions: 790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)