Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_J17
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   8.5  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 340 RAPPPP----LRSLISNLCNTCDLTPLPEWSCEQSAW 242
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 33/161 (20%), Positives = 42/161 (26%)
 Frame = +1

Query: 370 PPXXXXAXRRXXPPXXPXXSRTXPLXXPXXPXAXXXXXPXPPAXT*SAXXRXXXSSXXXE 549
           PP    +     PP  P          P  P       P PP    S   +    S    
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384

Query: 550 VXSXPPVXSSXLPVPXXSFLRPPXXTXLXXXXPXLSXXXXXXXPTYXXTPXHXPXPLSPX 729
           V S PP     +P      L PP         P +        P+    P   P    P 
Sbjct: 385 V-SNPPAPPPAIPGRSAPAL-PPLGNASRTSTPPV-PTPPSLPPS---APPSLPPSAPPS 438

Query: 730 HXXXXPSPXAXXPXXXFSFPXPLXXPXXPPXTXLSXLSXPS 852
                P+     P    + P P   P  PP    +    P+
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +2

Query: 410 PXPXPXXAPXXCXXPPXPXPXXXPXPXPXXPHDP 511
           P P P  AP     PP P P       P  P  P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +2

Query: 404 LPPXPXPXXAPXXCXXPPXPXPXXXPXPXPXXPHDPXXPA 523
           +P  P P  AP     P  P P   P   P  P  P  PA
Sbjct: 586 VPSVPQPPVAPVVPEAPSVPQPPVAPV-APEVPSVPQRPA 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,791
Number of Sequences: 5004
Number of extensions: 17388
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)