Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_J16
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 205 5e-54
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 101 9e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 90 3e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 89 5e-19
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 83 3e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 61 2e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 51 2e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 5e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 4e-05
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 28 1.8
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 27 4.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 205 bits (501), Expect = 5e-54
Identities = 98/133 (73%), Positives = 106/133 (79%), Gaps = 1/133 (0%)
Frame = -3
Query: 757 IPDGQVIXIGTKDSVA-QXFFPTXVFGYGACGIHETTNNSIMKCDVDIRKDLYANTVLSG 581
+PDGQVI IG + A + F G GIHE T NSIMKCDVDIRKDLY N V+SG
Sbjct: 242 LPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSG 301
Query: 580 GTTMYPGIADRMQKEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLFTFQQMWXSKQE 401
GTTMYPGIADRMQKEI A APS+MK+KI+APPERKYSVWIGGSILASL TFQQMW SKQE
Sbjct: 302 GTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 400 YDEXGPSIVHRKC 362
YDE GP IV+RKC
Sbjct: 362 YDESGPGIVYRKC 374
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 101 bits (243), Expect = 9e-23
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Frame = -3
Query: 760 RIPDGQVIXIGTKD-SVAQXFFPTXVFGYGACGIHETTNNSIMKCDVDIRKDLYANTVLS 584
++PD Q I +GT+ S + F + G A G+H SI+ D+D+R LY+N VLS
Sbjct: 246 QLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLS 305
Query: 583 GGTTMYPGIADRMQKEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLFTFQQMWXSKQ 404
GG+T+ G +R E+ A + ++KI A PER ++ W+GGSILASL TF+++ + +
Sbjct: 306 GGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSE 365
Query: 403 EYDEXGPSIVHRK 365
EY I R+
Sbjct: 366 EYKNDQNVIFRRR 378
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 90.2 bits (214), Expect = 3e-19
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 6/108 (5%)
Frame = -3
Query: 667 GIHETTNNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAXAPSTMKIKIIAP 488
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 487 P---ERKYSVWIGGSILASLFTFQQMWXSKQEYDEXGP---SIVHRKC 362
ER Y+ W+GGSIL+SL TF Q+W S+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 89.4 bits (212), Expect = 5e-19
Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = -3
Query: 676 GACGIHETTNNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAXAP-STMKIK 500
G+ G+HE SI+ CD ++R L N V++GGT++ PG+++R+Q E+ A S + +
Sbjct: 320 GSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVH 379
Query: 499 II-APPERKYSVWIGGSILASLFTFQQMWXSKQEYDEXG 386
+VW GGSILASL FQ +W SKQEYDE G
Sbjct: 380 TAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 83.4 bits (197), Expect = 3e-17
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 14/155 (9%)
Frame = -3
Query: 808 LSRNXXXDPAVPWRILRIPDGQVIXIGTKD-SVAQXFFPTXVFGYGACGIHETTNNSIMK 632
L + V R +PDG+VI +G++ + F + G G+ E ++I
Sbjct: 225 LDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQA 284
Query: 631 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI------------TAXAPSTMKIKIIAP 488
DVDIRK LY VLSGG++MY G+ R++KEI A P+ K+KI
Sbjct: 285 ADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPN-FKVKIEDA 343
Query: 487 PERKYSVWIGGSILASLFT-FQQMWXSKQEYDEXG 386
P R+++V+IGG++LA + MW SK E++E G
Sbjct: 344 PRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 61.3 bits (142), Expect = 2e-10
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 14/111 (12%)
Frame = -3
Query: 658 ETTNNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK-------------EITAXAP 518
E +N + +D+RK LY N VLSGG+T++ +R+Q+ E+ + A
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAK 368
Query: 517 ST-MKIKIIAPPERKYSVWIGGSILASLFTFQQMWXSKQEYDEXGPSIVHR 368
S + + +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 369 SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 51.2 bits (117), Expect = 2e-07
Identities = 26/114 (22%), Positives = 52/114 (45%)
Frame = -3
Query: 715 VAQXFFPTXVFGYGACGIHETTNNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 536
V + F + G GI E + + + ++ ++ L +N +++GG PG+ R+++E
Sbjct: 598 VPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRE 657
Query: 535 ITAXAPSTMKIKIIAPPERKYSVWIGGSILASLFTFQQMWXSKQEYDEXGPSIV 374
+T+ P I + W G S + F+ +++EY E GP +
Sbjct: 658 LTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 46.4 bits (105), Expect = 5e-06
Identities = 28/101 (27%), Positives = 46/101 (45%)
Frame = -3
Query: 667 GIHETTNNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAXAPSTMKIKIIAP 488
GI E S+ +I+ L N V GG +PG R+ E+ + AP+ ++K+ P
Sbjct: 299 GIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEP 358
Query: 487 PERKYSVWIGGSILASLFTFQQMWXSKQEYDEXGPSIVHRK 365
+ W S + L + ++ EY E G +I+ RK
Sbjct: 359 SDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 4e-05
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Frame = -3
Query: 664 IHETTNNSIMK-CDVDIR----KDLYANTVLSGGTTMYPGIADRMQKEITAXAPSTMKIK 500
+ + N SI CD ++ K+LY++ ++ GG +PG A +++ I + + I
Sbjct: 505 LDDAINQSIFSACDGNLSDEKAKNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTIS 564
Query: 499 IIAPP---ERKYSVWIGGSILASLFTFQQMWXSKQEYDEXGPSIVHRK 365
+I PP + ++ W G I + ++W ++ G ++ K
Sbjct: 565 VIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 288 NGDYKPELSSRPRAAGGSDARCVXKHFLCTMEGPXSSYSC 407
NG Y +++ P+ AG +C H L ME + +SC
Sbjct: 225 NGAYVEQMNQIPKLAG----KCTGDHMLINMEWGATDFSC 260
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 717 PLPRXFFQPSFLGMELAASTRPQI-TPS*SATWTS 616
P+ R F P FLG L T I TP A W +
Sbjct: 511 PIQRDIFTPLFLGASLIVPTAEDIGTPGQLAQWAN 545
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 474 TPYGSVDRSSPPSLPSNRCGXRNRSTTSXAPP 379
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,789
Number of Sequences: 5004
Number of extensions: 46937
Number of successful extensions: 123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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