Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_J15
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   122   5e-29
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   122   8e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    30   0.34 
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    27   4.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   9.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  122 bits (295), Expect = 5e-29
 Identities = 67/131 (51%), Positives = 79/131 (60%)
 Frame = -1

Query: 780 SRPFGKXXXXKFARAHPXGTXIGGXFTPGVFIXPXXXVHSXNLVX*L*WTLHKTHQPIXE 601
           SRP+G     KFA AH   T I G FTPG F       +    +  +        Q I E
Sbjct: 82  SRPYGHRAVLKFA-AHTGATAIAGRFTPGNFTNYITRTYREPRLI-IVTDPRADAQAIKE 139

Query: 600 ASYVNIPVIALCNTDSPLRFVDIVIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 421
           AS+VNIPVIALC+TDS L  VD+ IP N K   SIGL W+LLAREVLRLRG + R   W+
Sbjct: 140 ASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWE 199

Query: 420 VVVDLFFYRDP 388
           V+ DL+FYRDP
Sbjct: 200 VMPDLYFYRDP 210


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  122 bits (293), Expect = 8e-29
 Identities = 67/131 (51%), Positives = 79/131 (60%)
 Frame = -1

Query: 780 SRPFGKXXXXKFARAHPXGTXIGGXFTPGVFIXPXXXVHSXNLVX*L*WTLHKTHQPIXE 601
           +R +G     KFA AH   T I G FTPG F       +    +  +        Q I E
Sbjct: 81  TRTYGHRAVLKFA-AHTGATAIAGRFTPGNFTNYITRTYREPRLIVV-TDPRADAQAIKE 138

Query: 600 ASYVNIPVIALCNTDSPLRFVDIVIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 421
           AS+VNIPVIALC+TDS L  VDI IP N K   SIGL+W+LLAREVLR+RG L R   WD
Sbjct: 139 ASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWD 198

Query: 420 VVVDLFFYRDP 388
           V+ DL+FYRDP
Sbjct: 199 VMPDLYFYRDP 209


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 603 EASYVNIPVIALCNTDSPLRFVDIVIPCNTKSSHSIGLMWWLLAR 469
           EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 397 P*PLEKVKRMNNKPRNRLWYQLNQK*LLLSMKTGM 293
           P PLE+V+  + +  NR W  L  K   L M  G+
Sbjct: 19  PVPLEQVEAEDQQHENRFWLGLTAKEFRLMMLAGV 53


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 498 IGLMWWLLAREVLRLRGVLPRDQRWD 421
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 576 IALCNTDSPLRFVDIVIPCNTKSSHSI 496
           + LC+ +S  RF D+ +  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,451
Number of Sequences: 5004
Number of extensions: 49365
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)