Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_J06
         (1405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768...    32   0.94 
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    30   5.0  
12_01_0135 + 1042889-1044255,1045368-1045809                           29   8.8  

>01_01_0975 -
           7686297-7686458,7687117-7687245,7687754-7687831,
           7688011-7688469,7690648-7690788,7691771-7692421
          Length = 539

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +1

Query: 856 RPPXXRPXXPWXXXXXTTAXPPPPXXPHXXPPMXXXXXRXXA 981
           RPP      P      TTA  PPP  PH  PP+     R  A
Sbjct: 346 RPPLHVWGHPTAGVEPTTAAAPPPPSPHAQPPLLPVWPRHLA 387


>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 853 PRPPXXRPXXPWXXXXXTTAXPPPPXXPHXXPP 951
           P PP   P  P        A PPPP  P   PP
Sbjct: 34  PPPPPLEPAPPSTPQLRGEASPPPPPPPPVGPP 66


>12_01_0135 + 1042889-1044255,1045368-1045809
          Length = 602

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 853 PRPPXXRPXXPWXXXXXTTAXPPPPXXPHXXPP 951
           P PP   P  P       TA PPPP      PP
Sbjct: 134 PAPPPPPPSHPALLPPDATAPPPPPTSVAALPP 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,547,014
Number of Sequences: 37544
Number of extensions: 210013
Number of successful extensions: 1159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4432005256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)