Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_J05
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1174 - 26696869-26698191                                         30   2.9  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.9  

>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/63 (28%), Positives = 18/63 (28%)
 Frame = +2

Query: 377 PXXXPXPPPPIXXXXXWPXXALXXXXAPXXXXXXPGPPXPXXGGPSSXXXVXCPSPXGXP 556
           P   P PPPP       P         P        PP P    PS    V  P P   P
Sbjct: 155 PPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPP 214

Query: 557 GXP 565
             P
Sbjct: 215 TLP 217


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = +2

Query: 389 PXPPPPIXXXXXWPXXALXXXXAPXXXXXXPGPPXPXXGGPSSXXXVXCPSPXGXP 556
           P PPPP       P        AP        PP P   GP        PSP   P
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,364,668
Number of Sequences: 37544
Number of extensions: 170528
Number of successful extensions: 389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)