Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_J05
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    29   6.0  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    29   6.0  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    29   6.0  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    29   6.0  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    29   6.0  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.0  

>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +2

Query: 458 PXXXXXXPGPPXPXXGGPSSXXXVXCPSPXGXPG 559
           P      PGPP P  G P S      P P G PG
Sbjct: 157 PAGPAGPPGPPGPD-GNPGSPAGPSGPGPAGPPG 189


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +2

Query: 458 PXXXXXXPGPPXPXXGGPSSXXXVXCPSPXGXPG 559
           P      PGPP P  G P S      P P G PG
Sbjct: 157 PAGPAGPPGPPGPD-GNPGSPAGPSGPGPAGPPG 189


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +2

Query: 458 PXXXXXXPGPPXPXXGGPSSXXXVXCPSPXGXPG 559
           P      PGPP P  G P S      P P G PG
Sbjct: 157 PAGPAGPPGPPGPD-GNPGSPAGPSGPGPAGPPG 189


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +2

Query: 458 PXXXXXXPGPPXPXXGGPSSXXXVXCPSPXGXPG 559
           P      PGPP P  G P S      P P G PG
Sbjct: 157 PAGPAGPPGPPGPD-GNPGSPAGPSGPGPAGPPG 189


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = +2

Query: 479 PGPPXPXX----GGPSSXXXVXCPSPXGXPGXP 565
           PGPP P       GP+       PSP G PG P
Sbjct: 235 PGPPGPAGPPGPAGPAGEDAYAQPSPAGTPGPP 267


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
 Frame = +2

Query: 377 PXXXPXPPPPIXXXXXWPXXALXXXX---APXXXXXXPGPPXPXXGGPSSXXXVXCPSPX 547
           P   P PPPP      WP            P      P PP P   GP     +  P P 
Sbjct: 281 PGMTPRPPPP-PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339

Query: 548 G 550
           G
Sbjct: 340 G 340


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
 Frame = +2

Query: 377 PXXXPXPPPPIXXXXXWPXXALXXXX---APXXXXXXPGPPXPXXGGPSSXXXVXCPSPX 547
           P   P PPPP      WP            P      P PP P   GP     +  P P 
Sbjct: 291 PGMTPRPPPP-PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349

Query: 548 G 550
           G
Sbjct: 350 G 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,953,060
Number of Sequences: 27780
Number of extensions: 136974
Number of successful extensions: 422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)