Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_J04
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z92822-3|CAB07302.3|  774|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z92822-2|CAB70188.2|  850|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U58084-1|AAC47121.1|  743|Caenorhabditis elegans CUL-2 protein.        33   0.34 
Z92822-5|CAD45612.3|  743|Caenorhabditis elegans Hypothetical pr...    31   0.79 
U64609-4|AAB04601.3|  336|Caenorhabditis elegans Serpentine rece...    28   7.3  

>Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical
           protein ZK520.4c protein.
          Length = 791

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 528 LPTEXERSVHRFTTXYXSQXSGXKXNWLYNMSQGGTPHQXLQEQ 397
           LP   +  +  F   Y  + +G K  WL+NMSQG      L +Q
Sbjct: 577 LPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQ 620


>Z92822-3|CAB07302.3|  774|Caenorhabditis elegans Hypothetical
           protein ZK520.4b protein.
          Length = 774

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 528 LPTEXERSVHRFTTXYXSQXSGXKXNWLYNMSQGGTPHQXLQEQ 397
           LP   +  +  F   Y  + +G K  WL+NMSQG      L +Q
Sbjct: 560 LPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQ 603


>Z92822-2|CAB70188.2|  850|Caenorhabditis elegans Hypothetical
           protein ZK520.4a protein.
          Length = 850

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 528 LPTEXERSVHRFTTXYXSQXSGXKXNWLYNMSQGGTPHQXLQEQ 397
           LP   +  +  F   Y  + +G K  WL+NMSQG      L +Q
Sbjct: 636 LPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQ 679


>U58084-1|AAC47121.1|  743|Caenorhabditis elegans CUL-2 protein.
          Length = 743

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 504 VHRFTTXYXSQXSGXKXNWLYNMSQGGTPHQXLQEQVHAAGEHV 373
           +  F   Y  + +G K  WL+NMSQG      L +Q H A  +V
Sbjct: 535 IQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQ-HVAQMYV 577


>Z92822-5|CAD45612.3|  743|Caenorhabditis elegans Hypothetical
           protein ZK520.4d protein.
          Length = 743

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 504 VHRFTTXYXSQXSGXKXNWLYNMSQGGTPHQXLQEQ 397
           +  F   Y  + +G K  WL+NMSQG      L +Q
Sbjct: 535 IQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQ 570


>U64609-4|AAB04601.3|  336|Caenorhabditis elegans Serpentine
           receptor, class m protein2 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 307 LDXVGDNGSXAXXVXRGSTAIWNVLACSVYLFL 405
           L+  GD+        RG T  W  + C+VY+F+
Sbjct: 174 LNGEGDSAFLMITAKRGGTIDWTSIICTVYIFV 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,779,852
Number of Sequences: 27780
Number of extensions: 103250
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)