Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_I24
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 239 3e-64
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 235 6e-63
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 99 7e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 49 7e-07
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 32 0.12
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 30 0.36
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.47
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.47
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 29 0.82
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 26 7.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 239 bits (586), Expect = 3e-64
Identities = 105/132 (79%), Positives = 119/132 (90%)
Frame = -3
Query: 528 PRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKFGINYQPPTVVPGG 349
PR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK GI Y+PP VPG
Sbjct: 311 PRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGS 370
Query: 348 DLA*VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 169
+A V RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA
Sbjct: 371 GIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 430
Query: 168 ALEKDYEEVGMD 133
ALE+DYEEVG D
Sbjct: 431 ALERDYEEVGQD 442
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = -2
Query: 664 PVSNSPLXTXAPVISAEKAYPWTAFRCPRSQTAWXEPANQMVKCDP 527
P + PL T +P++SA KA+ + EP NQMVKCDP
Sbjct: 267 PRIHFPLVTYSPIVSAAKAFH-ESNSVQEITNQCFEPYNQMVKCDP 311
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 235 bits (575), Expect = 6e-63
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = -3
Query: 528 PRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKFGINYQPPTVVPGG 349
PR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK GI +PP + G
Sbjct: 307 PRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGS 366
Query: 348 DLA*VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 169
++A V RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA
Sbjct: 367 EIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 426
Query: 168 ALEKDYEEVGMD 133
ALE+DYEEVG D
Sbjct: 427 ALERDYEEVGQD 438
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -2
Query: 664 PVSNSPLXTXAPVISAEKAYPWTAFRCPRSQTAWXEPANQMVKCDP 527
P + PL T AP++SA KA+ + EP NQMVKCDP
Sbjct: 263 PRIHFPLVTYAPIVSAAKAFH-ESNSVQEITNQCFEPYNQMVKCDP 307
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 99.1 bits (236), Expect = 7e-22
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Frame = -3
Query: 534 AIPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKFGINYQPPTVVP 355
A PRHG+Y+ L+RG V K+V+ I +++TK + FV+W P + PP
Sbjct: 303 ADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK--- 359
Query: 354 GGDLA*VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR-- 181
DL + + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 360 --DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 180 -EDLAALEKDYEEVGMD 133
DL + + Y+E G+D
Sbjct: 415 MNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 49.2 bits (112), Expect = 7e-07
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Frame = -3
Query: 495 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKFGINYQPPTVVPGGDLA*VQRAVCM 316
+ +G+ P DV+ ++ I+ +R F+ W P + ++ + P + ++ + M
Sbjct: 323 IIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----M 377
Query: 315 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 148
L+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 378 LANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.12
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -1
Query: 326 PSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--KRI 153
P+ + P + G+ TS TS T S S++ S+P P W P+
Sbjct: 134 PATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSA 193
Query: 152 TKKSAWTPLKARVREPKSTK 93
S+ TP+ V EP+ TK
Sbjct: 194 LGTSSKTPVYVVVDEPRFTK 213
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 30.3 bits (65), Expect = 0.36
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 6/132 (4%)
Frame = -1
Query: 476 YPRM*TRPSLP----SKPSVLXXXXXXXXXXXXXXXXXXXXPWCPEATWPRFNVPSACCP 309
YP P+LP SKP V+ P+ ++P P+ CP
Sbjct: 166 YPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHNHPYSSPTSYPPPLCPATYCP 225
Query: 308 TPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP--KPVRTWLPSKRITKKSAW 135
+ PP L A+ SS S ++ + T + + P + WLP + T +
Sbjct: 226 SNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMTQPT----F 281
Query: 134 TPLKARVREPKS 99
P A V +P S
Sbjct: 282 QPPSANVYQPAS 293
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.9 bits (64), Expect = 0.47
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 350 ATWPRFNVPSACCPTPPPSLKLGL-ALTTSSTSCTPSVLS 234
AT R+N + P P P G+ A+ T++TS TP LS
Sbjct: 1608 ATHSRYNASFSSSPPPQPGNSSGMSAMNTNTTSTTPVSLS 1647
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.9 bits (64), Expect = 0.47
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 350 ATWPRFNVPSACCPTPPPSLKLGL-ALTTSSTSCTPSVLS 234
AT R+N + P P P G+ A+ T++TS TP LS
Sbjct: 1608 ATHSRYNASFSSSPPPQPGNSSGMSAMNTNTTSTTPVSLS 1647
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 29.1 bits (62), Expect = 0.82
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 471 WVRRHHGTAYSKPCTCHDGGSHFTIWLAG 557
W R H Y+KPC DGG W G
Sbjct: 16 WRRDHPFGFYAKPCKSSDGGLDLMNWKVG 44
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 571 TAWXEPANQMVKCDPPSWQVHGLLYAVPW 485
+ W N M K DP +HG + A+P+
Sbjct: 105 SVWLAKVNGMTKSDPIILHLHGGMMALPY 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,240
Number of Sequences: 5004
Number of extensions: 63003
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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