Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_I21
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.81 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 169 CDPIVVEQGPVGGHADGASPWRELPQEVVP 258
           CDP ++ QG  G H   A   +++P    P
Sbjct: 52  CDPSLLRQGVPGHHYGAAGSQQDMPYPRFP 81


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 622 CRLYPKLNSDGRSVRGVQRLP 560
           CRLY       +S+R V +LP
Sbjct: 213 CRLYCYAQKHVKSIRAVTKLP 233


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 29  LCIYVGQAMVKLFLSVFILCWSSSVHRCAVRSTVDGTVRQFMPPNSH 169
           L +++    V +F S  IL     +    +R + DG  R F   +SH
Sbjct: 77  LAVFIVAGAVGVFSSPTILISYIYILMAILRMSADGGCRNFSTCSSH 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,741
Number of Sequences: 438
Number of extensions: 4034
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)