Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_I20
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 30 0.43
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.76
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 29 1.0
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 3.1
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 4.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 4.0
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 27 4.0
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 26 5.4
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 5.4
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 5.4
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 26 7.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.1
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.4
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 9.4
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 9.4
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.9 bits (64), Expect = 0.43
Identities = 41/164 (25%), Positives = 62/164 (37%)
Frame = +1
Query: 142 PLNDSPATLTPDVRSPPRSEPG*GRGATAVNTTTRGRGSPQGRPADGAFEANRRL*NVGR 321
PL +T T S P S TA +T++ S A A ++ L +V
Sbjct: 307 PLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSA--SSTPLTSVN- 363
Query: 322 LSTAARRAAQTVPLVSRNTPLDQNQPAGTGRDTLSTGRSIHSTAAR*STGSAPRGLTPSG 501
ST A A+ T PL S N+ L++ S ST+ + +AP T S
Sbjct: 364 -STTATSASST-PLTSVNS----TSATSASSTPLTSANSTTSTSV---SSTAPSYNTSSV 414
Query: 502 RPLTFTGGSPLPTGAGTYGRIPASGPRLDGDGSVRKGXSSPSLA 633
P + +PL + T +S P + + SS L+
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLS 458
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 325 STAARRAAQTVPLVSRNTPLDQNQPAGTGRDTLSTGRSIHSTAAR*STGSAPRGLTPSGR 504
++A ++ VS +TPL + T +T S S++A+ +T S TPS
Sbjct: 236 TSATATSSSISSTVSSSTPLTSSNST-----TAATSASATSSSAQYNTSSLLPSSTPSST 290
Query: 505 PLTFTGGSPLPTGAGT 552
PL+ + + + T
Sbjct: 291 PLSSANSTTATSASST 306
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.76
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Frame = -3
Query: 611 PFRTDPSPSSRGPEAGIRPYVPA--------PVGSGLPPVKV-KGRPEGVRPRGALPVL* 459
P T P P S P VPA P SG PPV G P +P A P +
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Query: 458 RAAVE*IERPVDSVSRPVP 402
+ +V P S + PVP
Sbjct: 1106 KPSVAVPPVPAPSGAPPVP 1124
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 437 ERPVDSVSRPVPAGWFWSSGVFRDTSGTVW 348
+R +D+ +P P +F G RD G +W
Sbjct: 492 DRYIDTYLKPYPGFYFTGDGATRDKDGYIW 521
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 293 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 415
R +E S S PVGPP W P T+TSL + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 4.0
Identities = 21/95 (22%), Positives = 39/95 (41%)
Frame = +1
Query: 292 ANRRL*NVGRLSTAARRAAQTVPLVSRNTPLDQNQPAGTGRDTLSTGRSIHSTAAR*STG 471
A++R+ + S + A+ P + P + PA + + + R +A S G
Sbjct: 467 ASKRVSKHDKASAEKHKVARK-PSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPG 525
Query: 472 SAPRGLTPSGRPLTFTGGSPLPTGAGTYGRIPASG 576
+ + P G+ +P+PT A T A+G
Sbjct: 526 TTSAAV-PGGKKSAIEAAAPIPTSADTVESKHAAG 559
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 270 PSRRSLRGESKALKRRPSQYGSPSGRPDGAAGVPEYPAGPEPACR 404
P + + R SK L+ GSPS A P PEPA +
Sbjct: 874 PKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPALK 918
Score = 25.8 bits (54), Expect = 7.1
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -3
Query: 578 GPEAGIRPYVPAPVGSGLPPVKVKGRPEGVRPRG-ALPVL*RAAVE*IE--RPVDSVSRP 408
G I P VPAP + LPP+ + P P A PV AA ++ +PV S P
Sbjct: 235 GQPIAIAP-VPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPVPMTSSP 293
Query: 407 VPA 399
A
Sbjct: 294 AMA 296
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 431 PVDSVSRPVPAGWFWSSGVFRDTSGTV 351
P+ S+S+ VP GW W F T+G +
Sbjct: 293 PIASLSKIVPKGWQWCLSYFA-TAGVI 318
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 150 RLPCHSYTRRPIPSEVRTRMR*GGYRGQHYNQRARLTPRTPS--RRSLRGESK 302
R+ + + P+PS + + Q +Q+++ TPR S RR+L+ ++K
Sbjct: 76 RMLSRALAKNPVPSPAESESSERRHTPQTNSQKSQKTPRLSSNKRRTLKNDAK 128
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +1
Query: 367 SRNTPLDQNQPAGTGRDTL----STGRSIHSTAAR*STGSAPRGLTPSGRPLTFTGG 525
S N + +PA T T STG AA +T +AP + S P T +GG
Sbjct: 145 SSNNSFNFGKPASTTNTTTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGG 201
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.2 bits (55), Expect = 5.4
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +3
Query: 168 YTRRPIPSEVRTRMR*GGYR---GQHYNQRARLTPRTPSRRSLRGES-----KALKRRPS 323
+ ++P PS ++ GG R G+ + RL R+PS R S ++ +R S
Sbjct: 83 WAKQPPPSGPGSKR--GGRRERGGRVHGDSGRLRSRSPSPHEARSRSPYNDERSDRRSMS 140
Query: 324 -QYGSPSGRPDGAAGVPEY 377
+Y S S PDG + P+Y
Sbjct: 141 PRYRSRSRSPDGRSRSPDY 159
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = +1
Query: 472 SAPRGLTPSGRPLTFTG---GSPL 534
++P GL P+GRP F G G+PL
Sbjct: 422 TSPSGLNPTGRPSRFGGRVRGNPL 445
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.1
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Frame = +1
Query: 352 TVPLVSRNTPLDQNQPA-----GTGRDTL-STGRSIHSTAAR*STGSAPRGLTPSGRPLT 513
TVP S ++ PA GT L ST S ++ + TG++ +TP+ P +
Sbjct: 304 TVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 363
Query: 514 FTGGSPLPTGAGTYGRIPASGPRLDGDGSVRKGXSSP 624
+ S P A T +S P L S S P
Sbjct: 364 TSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIP 400
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 285 LRGESKALKRRPSQYGSPSGRPDGAA 362
L S + R+P QY SPSG + AA
Sbjct: 608 LNPTSGSFLRQPMQYSSPSGVSESAA 633
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = +1
Query: 124 RXFRTHPLNDSPATLTPDVRSPPRSEPG*GRGATAVNTTTRGRGSPQGRPADGAFE 291
R R P +T SPP + G T T R + +P+ P D + E
Sbjct: 141 RSGRQSPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPKDASNE 196
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 596 PSPSSRGPEAGIRPYVPAPV 537
P+ + RG E + PY+P PV
Sbjct: 348 PNEAGRGDERRVIPYMPGPV 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,128
Number of Sequences: 5004
Number of extensions: 55293
Number of successful extensions: 187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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