Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_I19
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    31   0.010
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.8  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 185 VVERHGVVGTTIQALVAGVVDVAPVPEALVLVREQVVLRDEREE 316
           V  R  V G  +  L+AG++   P+   L    E VVL D +EE
Sbjct: 137 VTRRIAVAGIAVVWLLAGLISFVPISLGLHRANEPVVLDDSKEE 180


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +2

Query: 35  LRWGLTSY*SKYLLGIVPEYLGQLAGSERDAVRPKVVYEIVEHVHLLRVDVVERHGVVGT 214
           LR  + +Y  + L+  VP +    +    D V  K+ YE+ +       D++ + G +G+
Sbjct: 438 LREDVINYNCRSLVASVPFFANADSNFVSDVVT-KLRYEVFQPG-----DIIIKEGTIGS 491

Query: 215 TIQALVAGVVDV 250
            +  +  G+VD+
Sbjct: 492 KMYFIQEGIVDI 503


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +2

Query: 35  LRWGLTSY*SKYLLGIVPEYLGQLAGSERDAVRPKVVYEIVEHVHLLRVDVVERHGVVGT 214
           LR  + +Y  + L+  VP +    +    D V  K+ YE+ +       D++ + G +G+
Sbjct: 406 LREDVINYNCRSLVASVPFFANADSNFVSDVVT-KLRYEVFQPG-----DIIIKEGTIGS 459

Query: 215 TIQALVAGVVDV 250
            +  +  G+VD+
Sbjct: 460 KMYFIQEGIVDI 471


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 311  PVRPAGPPV 285
            P RPAGPP+
Sbjct: 1003 PQRPAGPPI 1011


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 200 GVVGTTIQALVAGVVDVAPV 259
           GVVG TI ++VAG   +  V
Sbjct: 14  GVVGGTIASVVAGAASLTLV 33


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 311  PVRPAGPPV 285
            P RPAGPP+
Sbjct: 999  PQRPAGPPI 1007


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,433
Number of Sequences: 438
Number of extensions: 3585
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)