Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_I18
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416... 30 2.0
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.7
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 4.7
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 6.2
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 29 6.2
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 29 6.2
07_03_1162 + 24437396-24438652 28 8.2
06_03_0905 + 25843547-25844314 28 8.2
>12_02_1128 -
26341118-26341204,26341302-26341441,26341567-26341663,
26341755-26341830,26341919-26342118,26342199-26342297,
26342395-26342479,26342786-26343024,26343233-26343403,
26343605-26343848,26343980-26344253,26344755-26344934,
26345342-26345423,26346209-26346278,26346802-26346901,
26347003-26347097,26347181-26347317,26347342-26347420,
26347591-26347651,26348580-26349009
Length = 981
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 607 DAVXEGVRAGGQSLPLSSEXPSAYLTPSSLGMAXGVSP 494
DA +G GG SS PSA TP+++G G +P
Sbjct: 16 DAAAQGGGGGGFGSETSSASPSAPGTPTAMGAGGGAAP 53
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 81 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 182
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 240 PPFDTILYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 61
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 60 ILHSF 46
+LHSF
Sbjct: 1408 LLHSF 1412
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 73 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 219
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -3
Query: 615 IPGTPX*KGFAPGVKASRCHQRXHQRISPPRHW---AWLKGFRPLIFK*MMNHKLRALLV 445
IPG+ KG ++ASR + H+ ++P ++ A ++GFR + ++ K +L
Sbjct: 441 IPGSLTIKGIGSEIRASRTYGDYHRMLAPGENYEVMASMEGFRTKATRIVVEEKAVSLDF 500
Query: 444 VIPR 433
++ R
Sbjct: 501 ILDR 504
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -3
Query: 684 PDHPNXPNSIHXPTPXXNHPFPSIPGTPX*KGFAP 580
P+HP P S P P + P P P P F P
Sbjct: 434 PEHPPPPESTSPPPPPTSDPPPVPPPPPTTGSFMP 468
>07_03_1162 + 24437396-24438652
Length = 418
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 631 PPISINPRDAVXEGVRAGGQSLPL 560
PP + PR A+ EG A G+SLPL
Sbjct: 2 PPSGLFPRRALAEGAGALGRSLPL 25
>06_03_0905 + 25843547-25844314
Length = 255
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 737 PPXXLTXPXPXRXPAXXXPIIXXPRIPYTXPP 642
PP T P P P P++ P++P T PP
Sbjct: 63 PPKGPTYPSPVTRPP---PLVAPPKVPVTHPP 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,108,888
Number of Sequences: 37544
Number of extensions: 402157
Number of successful extensions: 1096
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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