Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_I16
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.84 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +2

Query: 710 VLXXTPPXXXXXPPAXXSXXXXPYXXXPPPPXRXAPXXPPPPSPXXIA 853
           +L  +PP     PPA       P     PPP       PPPP P  +A
Sbjct: 727 LLLKSPPPP---PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVA 771



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/48 (29%), Positives = 17/48 (35%)
 Frame = +2

Query: 710 VLXXTPPXXXXXPPAXXSXXXXPYXXXPPPPXRXAPXXPPPPSPXXIA 853
           V+  TP       P        P    PPP    A   PPPP P  ++
Sbjct: 739 VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 791 PPPPXRXAPXXPPPPSP 841
           PPPP    P  PPPP P
Sbjct: 13  PPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 791 PPPPXRXAPXXPPPPSP 841
           PPPP    P   PPP P
Sbjct: 12  PPPPPGFEPPSQPPPPP 28


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 348 LRSLISNLSNTCDLTPLPEWSCEQSAW 268
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +2

Query: 725 PPXXXXXPPAXXSXXXXPYXXXPPPPXRXAPXXPPPPSP 841
           PP     PP        P    PPP    AP   PP +P
Sbjct: 151 PPSPASAPPIPSKAPPIP-SSLPPPAQPAAPVKSPPSAP 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,611,364
Number of Sequences: 5004
Number of extensions: 19614
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)