Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_I15
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    37   0.022
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    34   0.16 

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -2

Query: 518 RXVDMGIPGXXKXSXYXGLXXWXVGTXXXEAXCXASXDXXWXVVVXLFXXXDPKESXKXP 339
           R VD+GIP   K     G   W +     +          W V+V LF   DP+E+ +  
Sbjct: 159 RYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQE 218

Query: 338 RATPA 324
              PA
Sbjct: 219 EEAPA 223


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -2

Query: 518 RXVDMGIPGXXKXSXYXGLXXWXVGTXXXEAXCXASXDXXWXVVVXLFXXXDPKES 351
           R VD+GIP   K     G   W +     +          W V+V LF   DP+E+
Sbjct: 159 RYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEA 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,073,326
Number of Sequences: 37544
Number of extensions: 142995
Number of successful extensions: 367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)